Results 61 - 80 of 282 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15828 | 3' | -64.1 | NC_004065.1 | + | 187032 | 0.72 | 0.364798 |
Target: 5'- cGGCGGCGCGGCGuCUGAgGugauGCGUagcaCCGc -3' miRNA: 3'- -CCGCCGCGCCGC-GGCUgU----CGCA----GGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 120893 | 0.72 | 0.371383 |
Target: 5'- gGGCGGCGUcucGCGgCGACAGCacccgcaGUCCGu -3' miRNA: 3'- -CCGCCGCGc--CGCgGCUGUCG-------CAGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 24845 | 0.72 | 0.37212 |
Target: 5'- cGCGGCGCccgauguuGGCGgCGACGGCGgccucgaCGGu -3' miRNA: 3'- cCGCCGCG--------CCGCgGCUGUCGCag-----GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 91203 | 0.72 | 0.37212 |
Target: 5'- cGGCGuGCGCGGCaUCGGCGcCG-CCGGa -3' miRNA: 3'- -CCGC-CGCGCCGcGGCUGUcGCaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 106341 | 0.72 | 0.37212 |
Target: 5'- gGGCGGCcCGGCGCUgcugcacgGGCAGCGcgCCa- -3' miRNA: 3'- -CCGCCGcGCCGCGG--------CUGUCGCa-GGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 197250 | 0.72 | 0.37212 |
Target: 5'- aGCGG-GUGGCguGCCGAUAGgGUgCCGGa -3' miRNA: 3'- cCGCCgCGCCG--CGGCUGUCgCA-GGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 138557 | 0.72 | 0.379541 |
Target: 5'- cGGCGGCGgacugacggcgaCGGUGCCGuCcGC-UCCGGg -3' miRNA: 3'- -CCGCCGC------------GCCGCGGCuGuCGcAGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 127134 | 0.72 | 0.379541 |
Target: 5'- cGCGGCgGCGGCGCuacCGGCGGCGgcgaucgcccUCuCGGu -3' miRNA: 3'- cCGCCG-CGCCGCG---GCUGUCGC----------AG-GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 109870 | 0.72 | 0.379541 |
Target: 5'- gGGCGGUGCcaccGGCGUcgccgCGGCcGCGUCgGGg -3' miRNA: 3'- -CCGCCGCG----CCGCG-----GCUGuCGCAGgCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 35623 | 0.72 | 0.384795 |
Target: 5'- cGGCGGCgGCGGCgGCggggaugucaucggCGACAGgGUCCc- -3' miRNA: 3'- -CCGCCG-CGCCG-CG--------------GCUGUCgCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 56720 | 0.72 | 0.387061 |
Target: 5'- aGCGGCgGCGGCGgCGGCAGCagcuGUCUc- -3' miRNA: 3'- cCGCCG-CGCCGCgGCUGUCG----CAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 145429 | 0.72 | 0.390096 |
Target: 5'- cGGCGGCGCuuagggaaucgcgauGGagaGgCGAUGGCGUCgGGg -3' miRNA: 3'- -CCGCCGCG---------------CCg--CgGCUGUCGCAGgCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 102554 | 0.71 | 0.393912 |
Target: 5'- cGGUGGCGcCGGgGUCGGgucccgcggccauCAGCGUCCu- -3' miRNA: 3'- -CCGCCGC-GCCgCGGCU-------------GUCGCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 120346 | 0.71 | 0.394678 |
Target: 5'- cGGCGGCGauGuCGUCGGagAGCGcCCGGa -3' miRNA: 3'- -CCGCCGCgcC-GCGGCUg-UCGCaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 141608 | 0.71 | 0.394678 |
Target: 5'- cGGCGGCG-GGCuccgcuGCCGGCGGUGg-CGGc -3' miRNA: 3'- -CCGCCGCgCCG------CGGCUGUCGCagGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 80318 | 0.71 | 0.402392 |
Target: 5'- gGGcCGGCGCGGCcgcgGCCcccCGGCGUUCGa -3' miRNA: 3'- -CC-GCCGCGCCG----CGGcu-GUCGCAGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 168620 | 0.71 | 0.402392 |
Target: 5'- cGGCugcuGGCGCuGGUGCCGcgGGCGgagCCGGc -3' miRNA: 3'- -CCG----CCGCG-CCGCGGCugUCGCa--GGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 117419 | 0.71 | 0.409415 |
Target: 5'- cGCGGCGCGGaguggcaGCCGAUcgcgAGUcaaauacugcgucGUCCGGc -3' miRNA: 3'- cCGCCGCGCCg------CGGCUG----UCG-------------CAGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 114865 | 0.71 | 0.4102 |
Target: 5'- cGgGGCGCGGCGCCcgacgacGAUGGCGgugaccucucccuacCCGGa -3' miRNA: 3'- cCgCCGCGCCGCGG-------CUGUCGCa--------------GGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 152728 | 0.71 | 0.4102 |
Target: 5'- gGGUGGCG-GGUGCUuuGACGGUGUuUCGGg -3' miRNA: 3'- -CCGCCGCgCCGCGG--CUGUCGCA-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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