miRNA display CGI


Results 81 - 100 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 114865 0.71 0.4102
Target:  5'- cGgGGCGCGGCGCCcgacgacGAUGGCGgugaccucucccuacCCGGa -3'
miRNA:   3'- cCgCCGCGCCGCGG-------CUGUCGCa--------------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 141651 0.71 0.418103
Target:  5'- gGGCGGUgGCGGUGCCG-CGGCcg-CGGa -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCuGUCGcagGCC- -5'
15828 3' -64.1 NC_004065.1 + 45539 0.71 0.418103
Target:  5'- cGGCGcCGCGGCGgCGGCGGCaG-CCGc -3'
miRNA:   3'- -CCGCcGCGCCGCgGCUGUCG-CaGGCc -5'
15828 3' -64.1 NC_004065.1 + 68589 0.71 0.418103
Target:  5'- cGGCGGCGauccaGaGCGCCGACA-CGUCgcaccUGGa -3'
miRNA:   3'- -CCGCCGCg----C-CGCGGCUGUcGCAG-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 153350 0.71 0.426096
Target:  5'- cGgGGacgGCGGCGCCGAC-GCGaUCCGu -3'
miRNA:   3'- cCgCCg--CGCCGCGGCUGuCGC-AGGCc -5'
15828 3' -64.1 NC_004065.1 + 166543 0.71 0.426096
Target:  5'- uGGCuGCGCgacGGCGCCuGGCGGCugcaCCGGg -3'
miRNA:   3'- -CCGcCGCG---CCGCGG-CUGUCGca--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 86921 0.71 0.426096
Target:  5'- cGGCGGCGCGcGCGUCGAaaacgaagaCGGUGgagaggaccUCCGa -3'
miRNA:   3'- -CCGCCGCGC-CGCGGCU---------GUCGC---------AGGCc -5'
15828 3' -64.1 NC_004065.1 + 201498 0.71 0.426096
Target:  5'- uGCGGCG-GGCGCUacucucgucaGGCAGCGggCGGa -3'
miRNA:   3'- cCGCCGCgCCGCGG----------CUGUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 201208 0.71 0.426096
Target:  5'- gGGCGGCGCGGCGaCGu--GCGUgCa- -3'
miRNA:   3'- -CCGCCGCGCCGCgGCuguCGCAgGcc -5'
15828 3' -64.1 NC_004065.1 + 117149 0.71 0.434181
Target:  5'- aGGaCGGUGaaCGGCaCCGACAGCG-CCGa -3'
miRNA:   3'- -CC-GCCGC--GCCGcGGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 100606 0.7 0.442353
Target:  5'- uGGCGGuCGCGGCcuugaaccaGCCGACguuaauguugucGGUGUUCGa -3'
miRNA:   3'- -CCGCC-GCGCCG---------CGGCUG------------UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 229658 0.7 0.442353
Target:  5'- cGGCGGCaGUGGCag-GugGGCGUCgGGg -3'
miRNA:   3'- -CCGCCG-CGCCGcggCugUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 33478 0.7 0.450612
Target:  5'- cGGCcgugGGCGCcuacGCGCCGGCAGgCGUCUu- -3'
miRNA:   3'- -CCG----CCGCGc---CGCGGCUGUC-GCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 66642 0.7 0.450612
Target:  5'- cGuCGGCuuCGGCGCgGugGGCGcCCGGc -3'
miRNA:   3'- cC-GCCGc-GCCGCGgCugUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 79550 0.7 0.450612
Target:  5'- aGGCGGUcgauGCGGCGCa-GCGGCGcuUCCuGGc -3'
miRNA:   3'- -CCGCCG----CGCCGCGgcUGUCGC--AGG-CC- -5'
15828 3' -64.1 NC_004065.1 + 116150 0.7 0.450612
Target:  5'- cGGCGGCuCGGgGCCGGguCGGUagGUCuCGGa -3'
miRNA:   3'- -CCGCCGcGCCgCGGCU--GUCG--CAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 99370 0.7 0.458954
Target:  5'- uGGCaGCGaCGGCGCCGAC--UGUCCc- -3'
miRNA:   3'- -CCGcCGC-GCCGCGGCUGucGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 102022 0.7 0.462315
Target:  5'- -uUGGCGCGGCGggccaccucggugacCCG-CGGCGgCCGGg -3'
miRNA:   3'- ccGCCGCGCCGC---------------GGCuGUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 151423 0.7 0.467378
Target:  5'- aGGCGGCGCGacgacgucGCGuUCGACGGCGacgUCGa -3'
miRNA:   3'- -CCGCCGCGC--------CGC-GGCUGUCGCa--GGCc -5'
15828 3' -64.1 NC_004065.1 + 164562 0.7 0.467378
Target:  5'- -cCGGCgGCGGCGCCGACcgcuucGCGcUCCa- -3'
miRNA:   3'- ccGCCG-CGCCGCGGCUGu-----CGC-AGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.