Results 1 - 20 of 282 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15828 | 3' | -64.1 | NC_004065.1 | + | 132771 | 0.65 | 0.729085 |
Target: 5'- -cCGGCGCGaaggucgccagaaGCGCCGu--GCG-CCGGa -3' miRNA: 3'- ccGCCGCGC-------------CGCGGCuguCGCaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 203022 | 0.65 | 0.729085 |
Target: 5'- uGGCGGCGUggaGGCuguuguugcugcuGCUGGCguuguuuuuGGCGagcUCCGGa -3' miRNA: 3'- -CCGCCGCG---CCG-------------CGGCUG---------UCGC---AGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 184872 | 0.65 | 0.726404 |
Target: 5'- gGGCGGCG-GGaCGCCGGgaacgagagaggauCgggagcgGGCGcCCGGg -3' miRNA: 3'- -CCGCCGCgCC-GCGGCU--------------G-------UCGCaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 90025 | 0.66 | 0.724613 |
Target: 5'- cGGCGGCGUcagcuccacgcucauGGCGaCGGCGGgGUUuuuuucucgCGGa -3' miRNA: 3'- -CCGCCGCG---------------CCGCgGCUGUCgCAG---------GCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 30877 | 0.66 | 0.721025 |
Target: 5'- cGGCGGguuCGaGCGCCcGCagGGCGUCgGGg -3' miRNA: 3'- -CCGCCgc-GC-CGCGGcUG--UCGCAGgCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 210595 | 0.66 | 0.721025 |
Target: 5'- aGCaGCGCGGUGCCucCGGCaccUCCGc -3' miRNA: 3'- cCGcCGCGCCGCGGcuGUCGc--AGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 135385 | 0.66 | 0.721025 |
Target: 5'- gGGaCGGUGaC-GCGCCGGCcGCGcCCGa -3' miRNA: 3'- -CC-GCCGC-GcCGCGGCUGuCGCaGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 66582 | 0.66 | 0.721025 |
Target: 5'- uGGCGaGCGCcugccgcacgauGGaCGCgGACAGgaUCCGGa -3' miRNA: 3'- -CCGC-CGCG------------CC-GCGgCUGUCgcAGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 139657 | 0.66 | 0.721025 |
Target: 5'- aGCuGUGCGGCGCguGCGGCGgCCGc -3' miRNA: 3'- cCGcCGCGCCGCGgcUGUCGCaGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 41481 | 0.66 | 0.721025 |
Target: 5'- aGCaGCGU-GCGCCGG-GGCGUCgGGa -3' miRNA: 3'- cCGcCGCGcCGCGGCUgUCGCAGgCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 43521 | 0.66 | 0.71201 |
Target: 5'- cGGCGGC-CaGGaagaGUCGAuCGGCGUCCc- -3' miRNA: 3'- -CCGCCGcG-CCg---CGGCU-GUCGCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 112559 | 0.66 | 0.71201 |
Target: 5'- cGGUGGCgGCGaGCgGCCG-CGGag-CCGGa -3' miRNA: 3'- -CCGCCG-CGC-CG-CGGCuGUCgcaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 101866 | 0.66 | 0.71201 |
Target: 5'- aGCGGCugGCGGC-CCGGCgAGCGUaacgCCa- -3' miRNA: 3'- cCGCCG--CGCCGcGGCUG-UCGCA----GGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 69110 | 0.66 | 0.71201 |
Target: 5'- cGGUGgacgagcaggacGCGCGGCgcGCCGACAagGUG-CUGGg -3' miRNA: 3'- -CCGC------------CGCGCCG--CGGCUGU--CGCaGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 165387 | 0.66 | 0.71201 |
Target: 5'- cGGCGGaCGCGcG-GUCGAUGGCcuUCUGGa -3' miRNA: 3'- -CCGCC-GCGC-CgCGGCUGUCGc-AGGCC- -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 201865 | 0.66 | 0.71201 |
Target: 5'- uGGCGGUucaggucguaGcCGGUcacgcagagGCCGAUGGCGUCCc- -3' miRNA: 3'- -CCGCCG----------C-GCCG---------CGGCUGUCGCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 163282 | 0.66 | 0.71201 |
Target: 5'- -uCGGuCGCGaCGCCGcCGGgGUCCGa -3' miRNA: 3'- ccGCC-GCGCcGCGGCuGUCgCAGGCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 109625 | 0.66 | 0.71201 |
Target: 5'- cGCGGUGCccaccacCGUCGAgGGCGUCCu- -3' miRNA: 3'- cCGCCGCGcc-----GCGGCUgUCGCAGGcc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 65555 | 0.66 | 0.71201 |
Target: 5'- --gGGCGCGuCGCCGGCGG-GUCgCGa -3' miRNA: 3'- ccgCCGCGCcGCGGCUGUCgCAG-GCc -5' |
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15828 | 3' | -64.1 | NC_004065.1 | + | 103306 | 0.66 | 0.711105 |
Target: 5'- cGGCGGCaggcucaGCGGuCGCCGcaGGCGUa-GGu -3' miRNA: 3'- -CCGCCG-------CGCC-GCGGCugUCGCAggCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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