miRNA display CGI


Results 41 - 60 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 62376 0.66 0.684658
Target:  5'- uGGCGGCgGgGGUGgUGGCGGCGgggguggcggCCGcGg -3'
miRNA:   3'- -CCGCCG-CgCCGCgGCUGUCGCa---------GGC-C- -5'
15828 3' -64.1 NC_004065.1 + 32951 0.66 0.684658
Target:  5'- cGCGGaUGCgGGCGUCGACGucGCGg-CGGa -3'
miRNA:   3'- cCGCC-GCG-CCGCGGCUGU--CGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 38556 0.66 0.684658
Target:  5'- cGCGuGCGUgguGGUGCCGcaccuCGGCGUCgaGGa -3'
miRNA:   3'- cCGC-CGCG---CCGCGGCu----GUCGCAGg-CC- -5'
15828 3' -64.1 NC_004065.1 + 115902 0.66 0.684658
Target:  5'- uGCGGCuCGGgGCCGucguCGGCcucggCCGGc -3'
miRNA:   3'- cCGCCGcGCCgCGGCu---GUCGca---GGCC- -5'
15828 3' -64.1 NC_004065.1 + 197789 0.66 0.684658
Target:  5'- uGGCGGCGa-GU-CCGACGGC-UCCGa -3'
miRNA:   3'- -CCGCCGCgcCGcGGCUGUCGcAGGCc -5'
15828 3' -64.1 NC_004065.1 + 160610 0.66 0.684658
Target:  5'- aGGuCGGCGCgcaccuGGCGCCccgucGGCAGCuguUCCGc -3'
miRNA:   3'- -CC-GCCGCG------CCGCGG-----CUGUCGc--AGGCc -5'
15828 3' -64.1 NC_004065.1 + 32864 0.66 0.68374
Target:  5'- aGCuGGCGUcccuggucgagagGcGCGCCGGCgAGCGUCUGc -3'
miRNA:   3'- cCG-CCGCG-------------C-CGCGGCUG-UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 183706 0.66 0.681902
Target:  5'- uGUGGCGCacguagcccucguaGGCGCCcugaGACAG-GUCCaGGu -3'
miRNA:   3'- cCGCCGCG--------------CCGCGG----CUGUCgCAGG-CC- -5'
15828 3' -64.1 NC_004065.1 + 162175 0.66 0.679143
Target:  5'- uGCGGCGCaGCgucuucGCCGugcccuucugcugcgGCGGCacGUCCGGc -3'
miRNA:   3'- cCGCCGCGcCG------CGGC---------------UGUCG--CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 45801 0.66 0.67546
Target:  5'- cGGgGGC-UGGCGCC-ACAcgccGCGUgCGGg -3'
miRNA:   3'- -CCgCCGcGCCGCGGcUGU----CGCAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 75783 0.66 0.67546
Target:  5'- aGGCGGCGguCGGCGagggggagCGGCGGCGaggcacCUGGc -3'
miRNA:   3'- -CCGCCGC--GCCGCg-------GCUGUCGCa-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 58147 0.66 0.67546
Target:  5'- aGGCGGCGaaauCGuCGCCGGCGGagcugCUGGa -3'
miRNA:   3'- -CCGCCGC----GCcGCGGCUGUCgca--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 164191 0.67 0.666234
Target:  5'- cGUGcGCGCGGaucucCGCCGGCAucGCGUUCa- -3'
miRNA:   3'- cCGC-CGCGCC-----GCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 168165 0.67 0.666234
Target:  5'- aGGCccuuccGCGCGGgGCgCGACAGCGgCgCGa -3'
miRNA:   3'- -CCGc-----CGCGCCgCG-GCUGUCGCaG-GCc -5'
15828 3' -64.1 NC_004065.1 + 117071 0.67 0.666234
Target:  5'- -uCGGcCGCGGCGCUGuCGGUGgagauaaCGGg -3'
miRNA:   3'- ccGCC-GCGCCGCGGCuGUCGCag-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 513 0.67 0.666234
Target:  5'- aGGCGGgGUgaGGCGCCccgcCAGCGUgUGa -3'
miRNA:   3'- -CCGCCgCG--CCGCGGcu--GUCGCAgGCc -5'
15828 3' -64.1 NC_004065.1 + 59322 0.67 0.666234
Target:  5'- aGCGGCaaucGCGcCGCgGGCGGCGUgCGa -3'
miRNA:   3'- cCGCCG----CGCcGCGgCUGUCGCAgGCc -5'
15828 3' -64.1 NC_004065.1 + 63864 0.67 0.665309
Target:  5'- cGCGGUGCagacgucGGCGCCGcugccgcCGGCG-CCGa -3'
miRNA:   3'- cCGCCGCG-------CCGCGGCu------GUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 64142 0.67 0.660686
Target:  5'- cGGCaGCGCGuGCGgccucgccuucgggaCCGugAGagacCGUCCGGc -3'
miRNA:   3'- -CCGcCGCGC-CGC---------------GGCugUC----GCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 112860 0.67 0.656984
Target:  5'- gGGCGGacccCGuCGGCGCUGuCGGUG-CCGu -3'
miRNA:   3'- -CCGCC----GC-GCCGCGGCuGUCGCaGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.