miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 34107 0.67 0.656984
Target:  5'- -uCGGCGauaaaGCGCCGGCAGaacgaGUCCGc -3'
miRNA:   3'- ccGCCGCgc---CGCGGCUGUCg----CAGGCc -5'
15828 3' -64.1 NC_004065.1 + 112860 0.67 0.656984
Target:  5'- gGGCGGacccCGuCGGCGCUGuCGGUG-CCGu -3'
miRNA:   3'- -CCGCC----GC-GCCGCGGCuGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 106997 0.67 0.656984
Target:  5'- --aGGCGCaGCGCCGuCGGaCGUcacgcucgCCGGa -3'
miRNA:   3'- ccgCCGCGcCGCGGCuGUC-GCA--------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 82779 0.67 0.656984
Target:  5'- aGCaGGCGUccgguGGCGCCGACc-CaUCCGGg -3'
miRNA:   3'- cCG-CCGCG-----CCGCGGCUGucGcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 118410 0.67 0.654206
Target:  5'- cGGCGucgggaucgaucucGC-CGGCGaacaCGGCGGCGUCCu- -3'
miRNA:   3'- -CCGC--------------CGcGCCGCg---GCUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 124181 0.67 0.647718
Target:  5'- gGGUGuGCGCgcaGGcCGCCGAguagcacgagaaCGGCGUgCGGu -3'
miRNA:   3'- -CCGC-CGCG---CC-GCGGCU------------GUCGCAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 142776 0.67 0.647718
Target:  5'- cGGCcugcuGGUgGUGGCGCCGGgGGCGgCCa- -3'
miRNA:   3'- -CCG-----CCG-CGCCGCGGCUgUCGCaGGcc -5'
15828 3' -64.1 NC_004065.1 + 196837 0.67 0.647718
Target:  5'- cGGCaGGUGCgGGCGaCgGuACAGCGUCuCGc -3'
miRNA:   3'- -CCG-CCGCG-CCGC-GgC-UGUCGCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 43053 0.67 0.646791
Target:  5'- cGGCuucucgaGGCGuCGGCG-CGACAGaccgcaCGUUCGGa -3'
miRNA:   3'- -CCG-------CCGC-GCCGCgGCUGUC------GCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 45603 0.67 0.644009
Target:  5'- gGGgGGCGCGGgacgaggggaacgGUCGAgacaCGGCGUCCGc -3'
miRNA:   3'- -CCgCCGCGCCg------------CGGCU----GUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 18076 0.67 0.638442
Target:  5'- uGGCGGCaGCGacCGCCG-CAGCcucguggCCGGc -3'
miRNA:   3'- -CCGCCG-CGCc-GCGGCuGUCGca-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 36109 0.67 0.638442
Target:  5'- uGGCGGCaacGgGGCcgcuGCCGGCGGCGguugUGGu -3'
miRNA:   3'- -CCGCCG---CgCCG----CGGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 162643 0.67 0.638442
Target:  5'- uGGCcucGGCGCccagccuaGGCGUgucuagacuCGACcgcGCGUCCGGa -3'
miRNA:   3'- -CCG---CCGCG--------CCGCG---------GCUGu--CGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 66725 0.67 0.638442
Target:  5'- aGGCuGGCGCccGUGCCGucggaccccgGCGGCGUCgCGa -3'
miRNA:   3'- -CCG-CCGCGc-CGCGGC----------UGUCGCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 133059 0.67 0.638442
Target:  5'- cGGcCGGCGCagcaGGCG-CGGCAGCagaCGGg -3'
miRNA:   3'- -CC-GCCGCG----CCGCgGCUGUCGcagGCC- -5'
15828 3' -64.1 NC_004065.1 + 175933 0.67 0.638442
Target:  5'- cGGCGGCGUauauggcucuGGCucuGCCGACGGUGagaagauugCCGc -3'
miRNA:   3'- -CCGCCGCG----------CCG---CGGCUGUCGCa--------GGCc -5'
15828 3' -64.1 NC_004065.1 + 102398 0.67 0.637514
Target:  5'- aGCGGCagcgcgaGCGGUGCaCGuAgAGCG-CCGGu -3'
miRNA:   3'- cCGCCG-------CGCCGCG-GC-UgUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 64293 0.67 0.637514
Target:  5'- --aGGCGCGGCGCgCGucucggacauccaACAGgGUCUGc -3'
miRNA:   3'- ccgCCGCGCCGCG-GC-------------UGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 43723 0.67 0.635658
Target:  5'- aGCGGCGCacaGGUacacgaugGCCGAgGGUuucauccgcuccguGUCCGGg -3'
miRNA:   3'- cCGCCGCG---CCG--------CGGCUgUCG--------------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 33595 0.67 0.632874
Target:  5'- cGGaCGGCaucacgaugcugcuGCGG-GCCGGCAuggccaaggccaucGCGUUCGGg -3'
miRNA:   3'- -CC-GCCG--------------CGCCgCGGCUGU--------------CGCAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.