miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 30087 0.68 0.564566
Target:  5'- uGGCGGaGCGcGCGCUGAU-GUGUCaGGg -3'
miRNA:   3'- -CCGCCgCGC-CGCGGCUGuCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 30777 0.7 0.493114
Target:  5'- cGGCGGaCGCGGaCGCCGACGauGaCGacugaCGGa -3'
miRNA:   3'- -CCGCC-GCGCC-GCGGCUGU--C-GCag---GCC- -5'
15828 3' -64.1 NC_004065.1 + 30877 0.66 0.721025
Target:  5'- cGGCGGguuCGaGCGCCcGCagGGCGUCgGGg -3'
miRNA:   3'- -CCGCCgc-GC-CGCGGcUG--UCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 31915 0.86 0.048095
Target:  5'- cGCGGCGCGuCGCCGACAGCGUgCCGa -3'
miRNA:   3'- cCGCCGCGCcGCGGCUGUCGCA-GGCc -5'
15828 3' -64.1 NC_004065.1 + 32319 0.68 0.563653
Target:  5'- cGGCGGCcgcgaCGGCGUCGgacgucgagucgaGCGGCGgUCGGu -3'
miRNA:   3'- -CCGCCGc----GCCGCGGC-------------UGUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 32864 0.66 0.68374
Target:  5'- aGCuGGCGUcccuggucgagagGcGCGCCGGCgAGCGUCUGc -3'
miRNA:   3'- cCG-CCGCG-------------C-CGCGGCUG-UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 32951 0.66 0.684658
Target:  5'- cGCGGaUGCgGGCGUCGACGucGCGg-CGGa -3'
miRNA:   3'- cCGCC-GCG-CCGCGGCUGU--CGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 33055 0.68 0.573717
Target:  5'- aGGauGCG-GGCGCCGcCuuGUGUCUGGg -3'
miRNA:   3'- -CCgcCGCgCCGCGGCuGu-CGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 33478 0.7 0.450612
Target:  5'- cGGCcgugGGCGCcuacGCGCCGGCAGgCGUCUu- -3'
miRNA:   3'- -CCG----CCGCGc---CGCGGCUGUC-GCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 33595 0.67 0.632874
Target:  5'- cGGaCGGCaucacgaugcugcuGCGG-GCCGGCAuggccaaggccaucGCGUUCGGg -3'
miRNA:   3'- -CC-GCCG--------------CGCCgCGGCUGU--------------CGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 34107 0.67 0.656984
Target:  5'- -uCGGCGauaaaGCGCCGGCAGaacgaGUCCGc -3'
miRNA:   3'- ccGCCGCgc---CGCGGCUGUCg----CAGGCc -5'
15828 3' -64.1 NC_004065.1 + 35384 0.7 0.493114
Target:  5'- uGGCcgaGGCGUggaccgucaucGGCGCCGugGGagaGUaCCGGg -3'
miRNA:   3'- -CCG---CCGCG-----------CCGCGGCugUCg--CA-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 35568 0.7 0.493114
Target:  5'- cGGCGGCGCcgccGUGCCcaaccgcuucGACcgaGGCGcCCGGg -3'
miRNA:   3'- -CCGCCGCGc---CGCGG----------CUG---UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 35572 0.77 0.190475
Target:  5'- aGGCGGCcacaggcggaaucgGUGGCGUCGGCGGUGUCggugCGGg -3'
miRNA:   3'- -CCGCCG--------------CGCCGCGGCUGUCGCAG----GCC- -5'
15828 3' -64.1 NC_004065.1 + 35623 0.72 0.384795
Target:  5'- cGGCGGCgGCGGCgGCggggaugucaucggCGACAGgGUCCc- -3'
miRNA:   3'- -CCGCCG-CGCCG-CG--------------GCUGUCgCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 36109 0.67 0.638442
Target:  5'- uGGCGGCaacGgGGCcgcuGCCGGCGGCGguugUGGu -3'
miRNA:   3'- -CCGCCG---CgCCG----CGGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 38556 0.66 0.684658
Target:  5'- cGCGuGCGUgguGGUGCCGcaccuCGGCGUCgaGGa -3'
miRNA:   3'- cCGC-CGCG---CCGCGGCu----GUCGCAGg-CC- -5'
15828 3' -64.1 NC_004065.1 + 41481 0.66 0.721025
Target:  5'- aGCaGCGU-GCGCCGG-GGCGUCgGGa -3'
miRNA:   3'- cCGcCGCGcCGCGGCUgUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 42238 0.66 0.702939
Target:  5'- cGGCGGgG-GGCGCgauaGGgGGUGUCUGa -3'
miRNA:   3'- -CCGCCgCgCCGCGg---CUgUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 43053 0.67 0.646791
Target:  5'- cGGCuucucgaGGCGuCGGCG-CGACAGaccgcaCGUUCGGa -3'
miRNA:   3'- -CCG-------CCGC-GCCGCgGCUGUC------GCAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.