miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 43521 0.66 0.71201
Target:  5'- cGGCGGC-CaGGaagaGUCGAuCGGCGUCCc- -3'
miRNA:   3'- -CCGCCGcG-CCg---CGGCU-GUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 43723 0.67 0.635658
Target:  5'- aGCGGCGCacaGGUacacgaugGCCGAgGGUuucauccgcuccguGUCCGGg -3'
miRNA:   3'- cCGCCGCG---CCG--------CGGCUgUCG--------------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 45539 0.71 0.418103
Target:  5'- cGGCGcCGCGGCGgCGGCGGCaG-CCGc -3'
miRNA:   3'- -CCGCcGCGCCGCgGCUGUCG-CaGGCc -5'
15828 3' -64.1 NC_004065.1 + 45603 0.67 0.644009
Target:  5'- gGGgGGCGCGGgacgaggggaacgGUCGAgacaCGGCGUCCGc -3'
miRNA:   3'- -CCgCCGCGCCg------------CGGCU----GUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 45801 0.66 0.67546
Target:  5'- cGGgGGC-UGGCGCC-ACAcgccGCGUgCGGg -3'
miRNA:   3'- -CCgCCGcGCCGCGGcUGU----CGCAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 45987 0.68 0.555453
Target:  5'- -aCGGCGaccugGGCGCCGugGCGGCGUugaacUCGGg -3'
miRNA:   3'- ccGCCGCg----CCGCGGC--UGUCGCA-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 48104 0.76 0.205189
Target:  5'- uGGCGGCgGCGGUGgCGGCGGCGg-UGGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 49673 0.7 0.493114
Target:  5'- uGGCGGUGC--CGCCGGagcaGGCGUCCc- -3'
miRNA:   3'- -CCGCCGCGccGCGGCUg---UCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 50435 0.68 0.610613
Target:  5'- aGGCGcggucgcacacGCGUGGCGCCccuuCAGCGcCCa- -3'
miRNA:   3'- -CCGC-----------CGCGCCGCGGcu--GUCGCaGGcc -5'
15828 3' -64.1 NC_004065.1 + 55775 0.73 0.336518
Target:  5'- uGGCGGUcuCGGCGCCGAgcaGGCGaUCgCGGc -3'
miRNA:   3'- -CCGCCGc-GCCGCGGCUg--UCGC-AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 55855 0.66 0.700209
Target:  5'- aGCGGauccuccguauaguCGauCGGCGUCGAuCGGCGUCCaGGc -3'
miRNA:   3'- cCGCC--------------GC--GCCGCGGCU-GUCGCAGG-CC- -5'
15828 3' -64.1 NC_004065.1 + 56140 0.68 0.601356
Target:  5'- aGGCGGCgGCGGC-CCacacacACGGCGUgaCGGc -3'
miRNA:   3'- -CCGCCG-CGCCGcGGc-----UGUCGCAg-GCC- -5'
15828 3' -64.1 NC_004065.1 + 56617 0.68 0.582903
Target:  5'- aGGCGGcCGCGgauguggauGCGgUGGCAGCGgCCGcGg -3'
miRNA:   3'- -CCGCC-GCGC---------CGCgGCUGUCGCaGGC-C- -5'
15828 3' -64.1 NC_004065.1 + 56720 0.72 0.387061
Target:  5'- aGCGGCgGCGGCGgCGGCAGCagcuGUCUc- -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCG----CAGGcc -5'
15828 3' -64.1 NC_004065.1 + 58147 0.66 0.67546
Target:  5'- aGGCGGCGaaauCGuCGCCGGCGGagcugCUGGa -3'
miRNA:   3'- -CCGCCGC----GCcGCGGCUGUCgca--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 59139 0.68 0.564566
Target:  5'- aGCGaGCGCgaGGCGaCGACGGCGagagUCCGa -3'
miRNA:   3'- cCGC-CGCG--CCGCgGCUGUCGC----AGGCc -5'
15828 3' -64.1 NC_004065.1 + 59322 0.67 0.666234
Target:  5'- aGCGGCaaucGCGcCGCgGGCGGCGUgCGa -3'
miRNA:   3'- cCGCCG----CGCcGCGgCUGUCGCAgGCc -5'
15828 3' -64.1 NC_004065.1 + 59572 0.78 0.163432
Target:  5'- cGGCGGCaGCgaaGGCGCCuccGGCGGCGUCCu- -3'
miRNA:   3'- -CCGCCG-CG---CCGCGG---CUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 59716 0.74 0.26717
Target:  5'- aGCGGcCGCGGCGCaCGGCGacCGUCgCGGa -3'
miRNA:   3'- cCGCC-GCGCCGCG-GCUGUc-GCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 59740 0.8 0.126464
Target:  5'- cGGCGGCGaUGGUGCCGACcGCGUggCCGa -3'
miRNA:   3'- -CCGCCGC-GCCGCGGCUGuCGCA--GGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.