miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 59770 0.68 0.564566
Target:  5'- uGGUGGCgGCGGCgGCC-ACGGCcacgauaCCGGg -3'
miRNA:   3'- -CCGCCG-CGCCG-CGGcUGUCGca-----GGCC- -5'
15828 3' -64.1 NC_004065.1 + 61262 0.7 0.493114
Target:  5'- aGGCcuGCGCGGCGUCGACGG-GcUUGGa -3'
miRNA:   3'- -CCGc-CGCGCCGCGGCUGUCgCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 62376 0.66 0.684658
Target:  5'- uGGCGGCgGgGGUGgUGGCGGCGgggguggcggCCGcGg -3'
miRNA:   3'- -CCGCCG-CgCCGCgGCUGUCGCa---------GGC-C- -5'
15828 3' -64.1 NC_004065.1 + 62704 0.66 0.697473
Target:  5'- cGCGGUcuugggguagcuccuGCGGCGUCGGuCAGUGUaggaGGg -3'
miRNA:   3'- cCGCCG---------------CGCCGCGGCU-GUCGCAgg--CC- -5'
15828 3' -64.1 NC_004065.1 + 63864 0.67 0.665309
Target:  5'- cGCGGUGCagacgucGGCGCCGcugccgcCGGCG-CCGa -3'
miRNA:   3'- cCGCCGCG-------CCGCGGCu------GUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 64142 0.67 0.660686
Target:  5'- cGGCaGCGCGuGCGgccucgccuucgggaCCGugAGagacCGUCCGGc -3'
miRNA:   3'- -CCGcCGCGC-CGC---------------GGCugUC----GCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 64202 0.74 0.272966
Target:  5'- aGGCGGCG-GGCGgaGGCAGUGUCggCGGc -3'
miRNA:   3'- -CCGCCGCgCCGCggCUGUCGCAG--GCC- -5'
15828 3' -64.1 NC_004065.1 + 64293 0.67 0.637514
Target:  5'- --aGGCGCGGCGCgCGucucggacauccaACAGgGUCUGc -3'
miRNA:   3'- ccgCCGCGCCGCG-GC-------------UGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 64883 0.69 0.509745
Target:  5'- cGCGGCGC-GCGUCGgagaagaGCGGCGccagucgCCGGg -3'
miRNA:   3'- cCGCCGCGcCGCGGC-------UGUCGCa------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 65329 0.72 0.357576
Target:  5'- cGGCGGCgGCGGCGgCaGCAGC-UgCGGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGcUGUCGcAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 65555 0.66 0.71201
Target:  5'- --gGGCGCGuCGCCGGCGG-GUCgCGa -3'
miRNA:   3'- ccgCCGCGCcGCGGCUGUCgCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 66112 0.67 0.619884
Target:  5'- gGGgGGCGacaucaccgaGGCGCUGGC-GCG-CUGGg -3'
miRNA:   3'- -CCgCCGCg---------CCGCGGCUGuCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 66582 0.66 0.721025
Target:  5'- uGGCGaGCGCcugccgcacgauGGaCGCgGACAGgaUCCGGa -3'
miRNA:   3'- -CCGC-CGCG------------CC-GCGgCUGUCgcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 66603 0.68 0.592117
Target:  5'- cGGCGGCcaccGCGGCguuGCCGAC-GC-UCuCGGc -3'
miRNA:   3'- -CCGCCG----CGCCG---CGGCUGuCGcAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 66642 0.7 0.450612
Target:  5'- cGuCGGCuuCGGCGCgGugGGCGcCCGGc -3'
miRNA:   3'- cC-GCCGc-GCCGCGgCugUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 66725 0.67 0.638442
Target:  5'- aGGCuGGCGCccGUGCCGucggaccccgGCGGCGUCgCGa -3'
miRNA:   3'- -CCG-CCGCGc-CGCGGC----------UGUCGCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 66768 0.7 0.493114
Target:  5'- aGGaGGCGcCGGCGCCGccGCuGCG-CCGa -3'
miRNA:   3'- -CCgCCGC-GCCGCGGC--UGuCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 67134 0.68 0.601356
Target:  5'- aGCGGCGC-GCGCCugGAC-GCGaUCgCGGa -3'
miRNA:   3'- cCGCCGCGcCGCGG--CUGuCGC-AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 67598 0.68 0.573717
Target:  5'- cGGCucgagauaGCGCGGCGuCCGucgcaccguACGGCGUUCGa -3'
miRNA:   3'- -CCGc-------CGCGCCGC-GGC---------UGUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 67669 0.69 0.519481
Target:  5'- cGgGGaGCGGCGgCGGCGGCGg-CGGg -3'
miRNA:   3'- cCgCCgCGCCGCgGCUGUCGCagGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.