miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 229658 0.7 0.442353
Target:  5'- cGGCGGCaGUGGCag-GugGGCGUCgGGg -3'
miRNA:   3'- -CCGCCG-CGCCGcggCugUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 229540 0.69 0.514161
Target:  5'- cGCGGaCGCGGCGCgCGGCccggaggcugacucaGgcgagcgcGCGUCUGGa -3'
miRNA:   3'- cCGCC-GCGCCGCG-GCUG---------------U--------CGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 225389 0.75 0.250377
Target:  5'- cGGgGGCGCuGGCGCUGAUGGUG-CCGc -3'
miRNA:   3'- -CCgCCGCG-CCGCGGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 223905 0.67 0.629162
Target:  5'- uGGCGGCgGCGGCGU-GAUGGUuccuccaucuccGUCCGc -3'
miRNA:   3'- -CCGCCG-CGCCGCGgCUGUCG------------CAGGCc -5'
15828 3' -64.1 NC_004065.1 + 223246 0.77 0.175086
Target:  5'- aGGCGGUGUGGUaGUCGGCuGCGUuuGGu -3'
miRNA:   3'- -CCGCCGCGCCG-CGGCUGuCGCAggCC- -5'
15828 3' -64.1 NC_004065.1 + 223224 0.66 0.69382
Target:  5'- cGGCGGUaGCGGCGaCG-CGGUcuUCUGGa -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCuGUCGc-AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 210595 0.66 0.721025
Target:  5'- aGCaGCGCGGUGCCucCGGCaccUCCGc -3'
miRNA:   3'- cCGcCGCGCCGCGGcuGUCGc--AGGCc -5'
15828 3' -64.1 NC_004065.1 + 210144 0.68 0.610613
Target:  5'- cGGCGGCGaCGGgGUgGAuCAGgGUCUc- -3'
miRNA:   3'- -CCGCCGC-GCCgCGgCU-GUCgCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 209566 0.68 0.582903
Target:  5'- aGGCccGGC-CGGCuGCUGGCGgGCGUgCGGu -3'
miRNA:   3'- -CCG--CCGcGCCG-CGGCUGU-CGCAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 205526 0.7 0.467378
Target:  5'- gGGcCGGCGCucaGgGCCGGCGGCGgugCCa- -3'
miRNA:   3'- -CC-GCCGCGc--CgCGGCUGUCGCa--GGcc -5'
15828 3' -64.1 NC_004065.1 + 205438 0.7 0.484461
Target:  5'- cGGCGGUgGCGGCGaCGACAcGCG--CGGa -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGU-CGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 204556 0.68 0.582903
Target:  5'- gGGCGGCGggaGGUGCUG-C-GCGUCUGc -3'
miRNA:   3'- -CCGCCGCg--CCGCGGCuGuCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 204472 0.69 0.546384
Target:  5'- --aGGCGCGGgGCCGACGccgacGcCGUCUGu -3'
miRNA:   3'- ccgCCGCGCCgCGGCUGU-----C-GCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 203022 0.65 0.729085
Target:  5'- uGGCGGCGUggaGGCuguuguugcugcuGCUGGCguuguuuuuGGCGagcUCCGGa -3'
miRNA:   3'- -CCGCCGCG---CCG-------------CGGCUG---------UCGC---AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 202264 0.68 0.564566
Target:  5'- cGGCGGCGCaGCGUcucgaugcgCGGCGGgGUCa-- -3'
miRNA:   3'- -CCGCCGCGcCGCG---------GCUGUCgCAGgcc -5'
15828 3' -64.1 NC_004065.1 + 201865 0.66 0.71201
Target:  5'- uGGCGGUucaggucguaGcCGGUcacgcagagGCCGAUGGCGUCCc- -3'
miRNA:   3'- -CCGCCG----------C-GCCG---------CGGCUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 201498 0.71 0.426096
Target:  5'- uGCGGCG-GGCGCUacucucgucaGGCAGCGggCGGa -3'
miRNA:   3'- cCGCCGCgCCGCGG----------CUGUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 201208 0.71 0.426096
Target:  5'- gGGCGGCGCGGCGaCGu--GCGUgCa- -3'
miRNA:   3'- -CCGCCGCGCCGCgGCuguCGCAgGcc -5'
15828 3' -64.1 NC_004065.1 + 200848 0.67 0.619884
Target:  5'- cGGUGGaguuCGGCGUCGACGGgGgCgCGGg -3'
miRNA:   3'- -CCGCCgc--GCCGCGGCUGUCgCaG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 200787 0.77 0.187475
Target:  5'- cGCGGCgGUGGCgGgCGACGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCG-CgGCUGUCGCAG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.