miRNA display CGI


Results 21 - 40 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 200470 0.68 0.564566
Target:  5'- aGCGggaGCGCGGCcugauGCCGACAgGCcUCUGGu -3'
miRNA:   3'- cCGC---CGCGCCG-----CGGCUGU-CGcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 198026 0.76 0.200629
Target:  5'- aGGCGGuCGCGGuCGCCGGCGGU-UCCa- -3'
miRNA:   3'- -CCGCC-GCGCC-GCGGCUGUCGcAGGcc -5'
15828 3' -64.1 NC_004065.1 + 197789 0.66 0.684658
Target:  5'- uGGCGGCGa-GU-CCGACGGC-UCCGa -3'
miRNA:   3'- -CCGCCGCgcCGcGGCUGUCGcAGGCc -5'
15828 3' -64.1 NC_004065.1 + 197250 0.72 0.37212
Target:  5'- aGCGG-GUGGCguGCCGAUAGgGUgCCGGa -3'
miRNA:   3'- cCGCCgCGCCG--CGGCUGUCgCA-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 196837 0.67 0.647718
Target:  5'- cGGCaGGUGCgGGCGaCgGuACAGCGUCuCGc -3'
miRNA:   3'- -CCG-CCGCG-CCGC-GgC-UGUCGCAG-GCc -5'
15828 3' -64.1 NC_004065.1 + 195343 0.68 0.558183
Target:  5'- gGGCGGCGCccgcgucuugaagguGGCcaacaCGAUAGCGggauuccUCCGGg -3'
miRNA:   3'- -CCGCCGCG---------------CCGcg---GCUGUCGC-------AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 195081 0.69 0.526606
Target:  5'- gGGCGagcGCGCGGCGCaGACccccaggGGCGUcagcucgCCGGc -3'
miRNA:   3'- -CCGC---CGCGCCGCGgCUG-------UCGCA-------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 192813 0.69 0.528394
Target:  5'- cGGCGGCGUcugGGCGCUgcgcuugaGGCAGCcgcUCuCGGu -3'
miRNA:   3'- -CCGCCGCG---CCGCGG--------CUGUCGc--AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 188666 0.69 0.546384
Target:  5'- gGGC-GCGCGGCGggagaCGACGGuCGUCaGGc -3'
miRNA:   3'- -CCGcCGCGCCGCg----GCUGUC-GCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 187404 0.74 0.26717
Target:  5'- cGCGGUGUGGCGUCGAgGGCGagCGc -3'
miRNA:   3'- cCGCCGCGCCGCGGCUgUCGCagGCc -5'
15828 3' -64.1 NC_004065.1 + 187032 0.72 0.364798
Target:  5'- cGGCGGCGCGGCGuCUGAgGugauGCGUagcaCCGc -3'
miRNA:   3'- -CCGCCGCGCCGC-GGCUgU----CGCA----GGCc -5'
15828 3' -64.1 NC_004065.1 + 186905 0.74 0.278863
Target:  5'- cGGCGGUcuucGCGaGCGCgGAuCGGCG-CCGGg -3'
miRNA:   3'- -CCGCCG----CGC-CGCGgCU-GUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 185731 0.68 0.577388
Target:  5'- aGGCGGCacaGCaGGCGgaUCGACcgggcccacauguggGGCGUCUGGc -3'
miRNA:   3'- -CCGCCG---CG-CCGC--GGCUG---------------UCGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 185474 0.69 0.546384
Target:  5'- uGGUGGUGCGG-GUCGggagGCAGCG-CCGc -3'
miRNA:   3'- -CCGCCGCGCCgCGGC----UGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 184872 0.65 0.726404
Target:  5'- gGGCGGCG-GGaCGCCGGgaacgagagaggauCgggagcgGGCGcCCGGg -3'
miRNA:   3'- -CCGCCGCgCC-GCGGCU--------------G-------UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 184822 0.69 0.528394
Target:  5'- uGGCGGUgGCGGCaG-CGGCGGCGUguugccccugUCGGa -3'
miRNA:   3'- -CCGCCG-CGCCG-CgGCUGUCGCA----------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 184483 0.74 0.290346
Target:  5'- gGGCGGCugccgccgccgccGCGGCGCCGGguGgcguagacCGUCCGa -3'
miRNA:   3'- -CCGCCG-------------CGCCGCGGCUguC--------GCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 184044 0.67 0.619884
Target:  5'- -aCGGCGCccaGGuCGCCGuuacacACGGCGUCCu- -3'
miRNA:   3'- ccGCCGCG---CC-GCGGC------UGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 183706 0.66 0.681902
Target:  5'- uGUGGCGCacguagcccucguaGGCGCCcugaGACAG-GUCCaGGu -3'
miRNA:   3'- cCGCCGCG--------------CCGCGG----CUGUCgCAGG-CC- -5'
15828 3' -64.1 NC_004065.1 + 177482 0.69 0.501837
Target:  5'- cGGCGG-G-GGCGCaCGGCGGgGccgCCGGg -3'
miRNA:   3'- -CCGCCgCgCCGCG-GCUGUCgCa--GGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.