miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 175933 0.67 0.638442
Target:  5'- cGGCGGCGUauauggcucuGGCucuGCCGACGGUGagaagauugCCGc -3'
miRNA:   3'- -CCGCCGCG----------CCG---CGGCUGUCGCa--------GGCc -5'
15828 3' -64.1 NC_004065.1 + 173897 0.68 0.564566
Target:  5'- aGGCuGCagaagGCGaGCGCCGcCGuCGUCCGGg -3'
miRNA:   3'- -CCGcCG-----CGC-CGCGGCuGUcGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 171961 0.77 0.191773
Target:  5'- gGGCGGUgGCGGCGgCGGCGGCGga-GGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggCC- -5'
15828 3' -64.1 NC_004065.1 + 169556 0.69 0.510627
Target:  5'- uGGagGGCGCGGCaGUCGAgAGC-UCCGu -3'
miRNA:   3'- -CCg-CCGCGCCG-CGGCUgUCGcAGGCc -5'
15828 3' -64.1 NC_004065.1 + 168620 0.71 0.402392
Target:  5'- cGGCugcuGGCGCuGGUGCCGcgGGCGgagCCGGc -3'
miRNA:   3'- -CCG----CCGCG-CCGCGGCugUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 168561 0.78 0.163432
Target:  5'- aGCGGCgGCGGCGgCGACagcgGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUG----UCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 168165 0.67 0.666234
Target:  5'- aGGCccuuccGCGCGGgGCgCGACAGCGgCgCGa -3'
miRNA:   3'- -CCGc-----CGCGCCgCG-GCUGUCGCaG-GCc -5'
15828 3' -64.1 NC_004065.1 + 166543 0.71 0.426096
Target:  5'- uGGCuGCGCgacGGCGCCuGGCGGCugcaCCGGg -3'
miRNA:   3'- -CCGcCGCG---CCGCGG-CUGUCGca--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 166155 0.82 0.087814
Target:  5'- cGGCGGCaGCGGCGCCGACGucgugcaccgcgauGUGUCUGa -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCUGU--------------CGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 165743 0.66 0.692905
Target:  5'- cGC-GCGCcGCGCCuuccaggaacucgGACAGCGUCUGu -3'
miRNA:   3'- cCGcCGCGcCGCGG-------------CUGUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 165387 0.66 0.71201
Target:  5'- cGGCGGaCGCGcG-GUCGAUGGCcuUCUGGa -3'
miRNA:   3'- -CCGCC-GCGC-CgCGGCUGUCGc-AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 165083 0.73 0.32299
Target:  5'- aGGCGGUGggucaguaGGCGCCGucgucucugagGCGGCGUCCc- -3'
miRNA:   3'- -CCGCCGCg-------CCGCGGC-----------UGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 164562 0.7 0.467378
Target:  5'- -cCGGCgGCGGCGCCGACcgcuucGCGcUCCa- -3'
miRNA:   3'- ccGCCG-CGCCGCGGCUGu-----CGC-AGGcc -5'
15828 3' -64.1 NC_004065.1 + 164191 0.67 0.666234
Target:  5'- cGUGcGCGCGGaucucCGCCGGCAucGCGUUCa- -3'
miRNA:   3'- cCGC-CGCGCC-----GCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 163639 0.78 0.156055
Target:  5'- aGCGGCgGCGGCGgCGGCAGCGgcagCGGa -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 163488 0.73 0.32299
Target:  5'- cGGCGGCGcCGGUGgCGGCGGCuucaauucUUCGGa -3'
miRNA:   3'- -CCGCCGC-GCCGCgGCUGUCGc-------AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 163282 0.66 0.71201
Target:  5'- -uCGGuCGCGaCGCCGcCGGgGUCCGa -3'
miRNA:   3'- ccGCC-GCGCcGCGGCuGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 163263 0.76 0.205189
Target:  5'- cGGCGGCGcCGGCGCCucCucGCGauUCCGGu -3'
miRNA:   3'- -CCGCCGC-GCCGCGGcuGu-CGC--AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 163020 0.68 0.601356
Target:  5'- cGCGGgGCccguacacgGGCGCCGACuG-GUCaCGGc -3'
miRNA:   3'- cCGCCgCG---------CCGCGGCUGuCgCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 162902 0.69 0.528394
Target:  5'- --aGGCGC-GCGCCGcuguccagcACGGCGUCCa- -3'
miRNA:   3'- ccgCCGCGcCGCGGC---------UGUCGCAGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.