miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 163488 0.73 0.32299
Target:  5'- cGGCGGCGcCGGUGgCGGCGGCuucaauucUUCGGa -3'
miRNA:   3'- -CCGCCGC-GCCGCgGCUGUCGc-------AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 104162 0.75 0.239672
Target:  5'- cGGCGGUGuCGGuCGCCGcuuCGGUG-CCGGa -3'
miRNA:   3'- -CCGCCGC-GCC-GCGGCu--GUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 225389 0.75 0.250377
Target:  5'- cGGgGGCGCuGGCGCUGAUGGUG-CCGc -3'
miRNA:   3'- -CCgCCGCG-CCGCGGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 59716 0.74 0.26717
Target:  5'- aGCGGcCGCGGCGCaCGGCGacCGUCgCGGa -3'
miRNA:   3'- cCGCC-GCGCCGCG-GCUGUc-GCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 74667 0.74 0.26717
Target:  5'- cGCGGCGCGucCGCCGuagcGCAGgGUCCGa -3'
miRNA:   3'- cCGCCGCGCc-GCGGC----UGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 64202 0.74 0.272966
Target:  5'- aGGCGGCG-GGCGgaGGCAGUGUCggCGGc -3'
miRNA:   3'- -CCGCCGCgCCGCggCUGUCGCAG--GCC- -5'
15828 3' -64.1 NC_004065.1 + 128419 0.74 0.275313
Target:  5'- aGCGGCgGCGGCGCCGccaccgagucugagcGCggcggaGGCGUCCGcGg -3'
miRNA:   3'- cCGCCG-CGCCGCGGC---------------UG------UCGCAGGC-C- -5'
15828 3' -64.1 NC_004065.1 + 70114 0.73 0.303465
Target:  5'- -cCGGCaGCGGCGgCGGCGGCG-CCGa -3'
miRNA:   3'- ccGCCG-CGCCGCgGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 27286 0.73 0.309871
Target:  5'- cGGCGGCGC--CGCCGACGacGCGUCUa- -3'
miRNA:   3'- -CCGCCGCGccGCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 67749 0.76 0.224335
Target:  5'- aGCGGCGCcGCGuCCGACGGCGUgacgaaCGGc -3'
miRNA:   3'- cCGCCGCGcCGC-GGCUGUCGCAg-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 48104 0.76 0.205189
Target:  5'- uGGCGGCgGCGGUGgCGGCGGCGg-UGGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 29976 0.76 0.200629
Target:  5'- uGGCGGCgGCGGCGgCGGCAGUGguaucgCCa- -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCa-----GGcc -5'
15828 3' -64.1 NC_004065.1 + 166155 0.82 0.087814
Target:  5'- cGGCGGCaGCGGCGCCGACGucgugcaccgcgauGUGUCUGa -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCUGU--------------CGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 154155 0.78 0.156055
Target:  5'- cGGUGGCgGCGGCGgCGGCGGCGgcuguugCUGGc -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCa------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 163639 0.78 0.156055
Target:  5'- aGCGGCgGCGGCGgCGGCAGCGgcagCGGa -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 168561 0.78 0.163432
Target:  5'- aGCGGCgGCGGCGgCGACagcgGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUG----UCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 78670 0.78 0.171121
Target:  5'- aGCGGC-CGGCGCCG-CGGCGcCCGa -3'
miRNA:   3'- cCGCCGcGCCGCGGCuGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 152306 0.77 0.183262
Target:  5'- cGGCGGCgGCGGUGCCGGCGGgGacgaugaCGGc -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCUGUCgCag-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 200787 0.77 0.187475
Target:  5'- cGCGGCgGUGGCgGgCGACGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCG-CgGCUGUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 35572 0.77 0.190475
Target:  5'- aGGCGGCcacaggcggaaucgGUGGCGUCGGCGGUGUCggugCGGg -3'
miRNA:   3'- -CCGCCG--------------CGCCGCGGCUGUCGCAG----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.