miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 78670 0.78 0.171121
Target:  5'- aGCGGC-CGGCGCCG-CGGCGcCCGa -3'
miRNA:   3'- cCGCCGcGCCGCGGCuGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 168561 0.78 0.163432
Target:  5'- aGCGGCgGCGGCGgCGACagcgGGCGUCuCGGc -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUG----UCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 163639 0.78 0.156055
Target:  5'- aGCGGCgGCGGCGgCGGCAGCGgcagCGGa -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 154155 0.78 0.156055
Target:  5'- cGGUGGCgGCGGCGgCGGCGGCGgcuguugCUGGc -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCa------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 166155 0.82 0.087814
Target:  5'- cGGCGGCaGCGGCGCCGACGucgugcaccgcgauGUGUCUGa -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCUGU--------------CGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 59716 0.74 0.26717
Target:  5'- aGCGGcCGCGGCGCaCGGCGacCGUCgCGGa -3'
miRNA:   3'- cCGCC-GCGCCGCG-GCUGUc-GCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 74667 0.74 0.26717
Target:  5'- cGCGGCGCGucCGCCGuagcGCAGgGUCCGa -3'
miRNA:   3'- cCGCCGCGCc-GCGGC----UGUCgCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 197250 0.72 0.37212
Target:  5'- aGCGG-GUGGCguGCCGAUAGgGUgCCGGa -3'
miRNA:   3'- cCGCCgCGCCG--CGGCUGUCgCA-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 24845 0.72 0.37212
Target:  5'- cGCGGCGCccgauguuGGCGgCGACGGCGgccucgaCGGu -3'
miRNA:   3'- cCGCCGCG--------CCGCgGCUGUCGCag-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 91203 0.72 0.37212
Target:  5'- cGGCGuGCGCGGCaUCGGCGcCG-CCGGa -3'
miRNA:   3'- -CCGC-CGCGCCGcGGCUGUcGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 120893 0.72 0.371383
Target:  5'- gGGCGGCGUcucGCGgCGACAGCacccgcaGUCCGu -3'
miRNA:   3'- -CCGCCGCGc--CGCgGCUGUCG-------CAGGCc -5'
15828 3' -64.1 NC_004065.1 + 127646 0.72 0.357576
Target:  5'- uGCcGCuGCGGCGCCGAgGGCGg-CGGg -3'
miRNA:   3'- cCGcCG-CGCCGCGGCUgUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 96273 0.72 0.357576
Target:  5'- uGGaCGGCGgGGCgGCCaGgGGCGUCaCGGa -3'
miRNA:   3'- -CC-GCCGCgCCG-CGGcUgUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 120012 0.72 0.350456
Target:  5'- cGGCGG-GCGGUGCCGGCuGaagCUGGa -3'
miRNA:   3'- -CCGCCgCGCCGCGGCUGuCgcaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 55775 0.73 0.336518
Target:  5'- uGGCGGUcuCGGCGCCGAgcaGGCGaUCgCGGc -3'
miRNA:   3'- -CCGCCGc-GCCGCGGCUg--UCGC-AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 163488 0.73 0.32299
Target:  5'- cGGCGGCGcCGGUGgCGGCGGCuucaauucUUCGGa -3'
miRNA:   3'- -CCGCCGC-GCCGCgGCUGUCGc-------AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 27286 0.73 0.309871
Target:  5'- cGGCGGCGC--CGCCGACGacGCGUCUa- -3'
miRNA:   3'- -CCGCCGCGccGCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 70114 0.73 0.303465
Target:  5'- -cCGGCaGCGGCGgCGGCGGCG-CCGa -3'
miRNA:   3'- ccGCCG-CGCCGCgGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 128419 0.74 0.275313
Target:  5'- aGCGGCgGCGGCGCCGccaccgagucugagcGCggcggaGGCGUCCGcGg -3'
miRNA:   3'- cCGCCG-CGCCGCGGC---------------UG------UCGCAGGC-C- -5'
15828 3' -64.1 NC_004065.1 + 64202 0.74 0.272966
Target:  5'- aGGCGGCG-GGCGgaGGCAGUGUCggCGGc -3'
miRNA:   3'- -CCGCCGCgCCGCggCUGUCGCAG--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.