miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 27286 0.73 0.309871
Target:  5'- cGGCGGCGC--CGCCGACGacGCGUCUa- -3'
miRNA:   3'- -CCGCCGCGccGCGGCUGU--CGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 163488 0.73 0.32299
Target:  5'- cGGCGGCGcCGGUGgCGGCGGCuucaauucUUCGGa -3'
miRNA:   3'- -CCGCCGC-GCCGCgGCUGUCGc-------AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 138557 0.72 0.379541
Target:  5'- cGGCGGCGgacugacggcgaCGGUGCCGuCcGC-UCCGGg -3'
miRNA:   3'- -CCGCCGC------------GCCGCGGCuGuCGcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 35623 0.72 0.384795
Target:  5'- cGGCGGCgGCGGCgGCggggaugucaucggCGACAGgGUCCc- -3'
miRNA:   3'- -CCGCCG-CGCCG-CG--------------GCUGUCgCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 56720 0.72 0.387061
Target:  5'- aGCGGCgGCGGCGgCGGCAGCagcuGUCUc- -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCG----CAGGcc -5'
15828 3' -64.1 NC_004065.1 + 145429 0.72 0.390096
Target:  5'- cGGCGGCGCuuagggaaucgcgauGGagaGgCGAUGGCGUCgGGg -3'
miRNA:   3'- -CCGCCGCG---------------CCg--CgGCUGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 168620 0.71 0.402392
Target:  5'- cGGCugcuGGCGCuGGUGCCGcgGGCGgagCCGGc -3'
miRNA:   3'- -CCG----CCGCG-CCGCGGCugUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 117419 0.71 0.409415
Target:  5'- cGCGGCGCGGaguggcaGCCGAUcgcgAGUcaaauacugcgucGUCCGGc -3'
miRNA:   3'- cCGCCGCGCCg------CGGCUG----UCG-------------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 152728 0.71 0.4102
Target:  5'- gGGUGGCG-GGUGCUuuGACGGUGUuUCGGg -3'
miRNA:   3'- -CCGCCGCgCCGCGG--CUGUCGCA-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 114865 0.71 0.4102
Target:  5'- cGgGGCGCGGCGCCcgacgacGAUGGCGgugaccucucccuacCCGGa -3'
miRNA:   3'- cCgCCGCGCCGCGG-------CUGUCGCa--------------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 127134 0.72 0.379541
Target:  5'- cGCGGCgGCGGCGCuacCGGCGGCGgcgaucgcccUCuCGGu -3'
miRNA:   3'- cCGCCG-CGCCGCG---GCUGUCGC----------AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 109870 0.72 0.379541
Target:  5'- gGGCGGUGCcaccGGCGUcgccgCGGCcGCGUCgGGg -3'
miRNA:   3'- -CCGCCGCG----CCGCG-----GCUGuCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 55775 0.73 0.336518
Target:  5'- uGGCGGUcuCGGCGCCGAgcaGGCGaUCgCGGc -3'
miRNA:   3'- -CCGCCGc-GCCGCGGCUg--UCGC-AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 120012 0.72 0.350456
Target:  5'- cGGCGG-GCGGUGCCGGCuGaagCUGGa -3'
miRNA:   3'- -CCGCCgCGCCGCGGCUGuCgcaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 96273 0.72 0.357576
Target:  5'- uGGaCGGCGgGGCgGCCaGgGGCGUCaCGGa -3'
miRNA:   3'- -CC-GCCGCgCCG-CGGcUgUCGCAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 127646 0.72 0.357576
Target:  5'- uGCcGCuGCGGCGCCGAgGGCGg-CGGg -3'
miRNA:   3'- cCGcCG-CGCCGCGGCUgUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 120893 0.72 0.371383
Target:  5'- gGGCGGCGUcucGCGgCGACAGCacccgcaGUCCGu -3'
miRNA:   3'- -CCGCCGCGc--CGCgGCUGUCG-------CAGGCc -5'
15828 3' -64.1 NC_004065.1 + 91203 0.72 0.37212
Target:  5'- cGGCGuGCGCGGCaUCGGCGcCG-CCGGa -3'
miRNA:   3'- -CCGC-CGCGCCGcGGCUGUcGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 24845 0.72 0.37212
Target:  5'- cGCGGCGCccgauguuGGCGgCGACGGCGgccucgaCGGu -3'
miRNA:   3'- cCGCCGCG--------CCGCgGCUGUCGCag-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 197250 0.72 0.37212
Target:  5'- aGCGG-GUGGCguGCCGAUAGgGUgCCGGa -3'
miRNA:   3'- cCGCCgCGCCG--CGGCUGUCgCA-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.