miRNA display CGI


Results 81 - 100 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 117149 0.71 0.434181
Target:  5'- aGGaCGGUGaaCGGCaCCGACAGCG-CCGa -3'
miRNA:   3'- -CC-GCCGC--GCCGcGGCUGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 229658 0.7 0.442353
Target:  5'- cGGCGGCaGUGGCag-GugGGCGUCgGGg -3'
miRNA:   3'- -CCGCCG-CGCCGcggCugUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 116150 0.7 0.450612
Target:  5'- cGGCGGCuCGGgGCCGGguCGGUagGUCuCGGa -3'
miRNA:   3'- -CCGCCGcGCCgCGGCU--GUCG--CAG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 99370 0.7 0.458954
Target:  5'- uGGCaGCGaCGGCGCCGAC--UGUCCc- -3'
miRNA:   3'- -CCGcCGC-GCCGCGGCUGucGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 164562 0.7 0.467378
Target:  5'- -cCGGCgGCGGCGCCGACcgcuucGCGcUCCa- -3'
miRNA:   3'- ccGCCG-CGCCGCGGCUGu-----CGC-AGGcc -5'
15828 3' -64.1 NC_004065.1 + 151423 0.7 0.467378
Target:  5'- aGGCGGCGCGacgacgucGCGuUCGACGGCGacgUCGa -3'
miRNA:   3'- -CCGCCGCGC--------CGC-GGCUGUCGCa--GGCc -5'
15828 3' -64.1 NC_004065.1 + 101601 0.7 0.484461
Target:  5'- aGGCGGCGC-GCGUCGcauaugaaaacGgGGCGgacCCGGg -3'
miRNA:   3'- -CCGCCGCGcCGCGGC-----------UgUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 114865 0.71 0.4102
Target:  5'- cGgGGCGCGGCGCCcgacgacGAUGGCGgugaccucucccuacCCGGa -3'
miRNA:   3'- cCgCCGCGCCGCGG-------CUGUCGCa--------------GGCC- -5'
15828 3' -64.1 NC_004065.1 + 152728 0.71 0.4102
Target:  5'- gGGUGGCG-GGUGCUuuGACGGUGUuUCGGg -3'
miRNA:   3'- -CCGCCGCgCCGCGG--CUGUCGCA-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 117419 0.71 0.409415
Target:  5'- cGCGGCGCGGaguggcaGCCGAUcgcgAGUcaaauacugcgucGUCCGGc -3'
miRNA:   3'- cCGCCGCGCCg------CGGCUG----UCG-------------CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 24845 0.72 0.37212
Target:  5'- cGCGGCGCccgauguuGGCGgCGACGGCGgccucgaCGGu -3'
miRNA:   3'- cCGCCGCG--------CCGCgGCUGUCGCag-----GCC- -5'
15828 3' -64.1 NC_004065.1 + 197250 0.72 0.37212
Target:  5'- aGCGG-GUGGCguGCCGAUAGgGUgCCGGa -3'
miRNA:   3'- cCGCCgCGCCG--CGGCUGUCgCA-GGCC- -5'
15828 3' -64.1 NC_004065.1 + 109870 0.72 0.379541
Target:  5'- gGGCGGUGCcaccGGCGUcgccgCGGCcGCGUCgGGg -3'
miRNA:   3'- -CCGCCGCG----CCGCG-----GCUGuCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 127134 0.72 0.379541
Target:  5'- cGCGGCgGCGGCGCuacCGGCGGCGgcgaucgcccUCuCGGu -3'
miRNA:   3'- cCGCCG-CGCCGCG---GCUGUCGC----------AG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 138557 0.72 0.379541
Target:  5'- cGGCGGCGgacugacggcgaCGGUGCCGuCcGC-UCCGGg -3'
miRNA:   3'- -CCGCCGC------------GCCGCGGCuGuCGcAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 35623 0.72 0.384795
Target:  5'- cGGCGGCgGCGGCgGCggggaugucaucggCGACAGgGUCCc- -3'
miRNA:   3'- -CCGCCG-CGCCG-CG--------------GCUGUCgCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 56720 0.72 0.387061
Target:  5'- aGCGGCgGCGGCGgCGGCAGCagcuGUCUc- -3'
miRNA:   3'- cCGCCG-CGCCGCgGCUGUCG----CAGGcc -5'
15828 3' -64.1 NC_004065.1 + 145429 0.72 0.390096
Target:  5'- cGGCGGCGCuuagggaaucgcgauGGagaGgCGAUGGCGUCgGGg -3'
miRNA:   3'- -CCGCCGCG---------------CCg--CgGCUGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 168620 0.71 0.402392
Target:  5'- cGGCugcuGGCGCuGGUGCCGcgGGCGgagCCGGc -3'
miRNA:   3'- -CCG----CCGCG-CCGCGGCugUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 61262 0.7 0.493114
Target:  5'- aGGCcuGCGCGGCGUCGACGG-GcUUGGa -3'
miRNA:   3'- -CCGc-CGCGCCGCGGCUGUCgCaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.