miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 99667 1.11 0.00087
Target:  5'- cGGCGGCGCGGCGCCGACAGCGUCCGGu -3'
miRNA:   3'- -CCGCCGCGCCGCGGCUGUCGCAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 83420 0.75 0.239672
Target:  5'- -aCGGCGUccagGGUGUCGACGGCGUugCCGGg -3'
miRNA:   3'- ccGCCGCG----CCGCGGCUGUCGCA--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 187404 0.74 0.26717
Target:  5'- cGCGGUGUGGCGUCGAgGGCGagCGc -3'
miRNA:   3'- cCGCCGCGCCGCGGCUgUCGCagGCc -5'
15828 3' -64.1 NC_004065.1 + 203022 0.65 0.729085
Target:  5'- uGGCGGCGUggaGGCuguuguugcugcuGCUGGCguuguuuuuGGCGagcUCCGGa -3'
miRNA:   3'- -CCGCCGCG---CCG-------------CGGCUG---------UCGC---AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 79356 0.8 0.120634
Target:  5'- gGGCGGCGCGGCGCUGgaACAGUucgagaUCUGGg -3'
miRNA:   3'- -CCGCCGCGCCGCGGC--UGUCGc-----AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 59740 0.8 0.126464
Target:  5'- cGGCGGCGaUGGUGCCGACcGCGUggCCGa -3'
miRNA:   3'- -CCGCCGC-GCCGCGGCUGuCGCA--GGCc -5'
15828 3' -64.1 NC_004065.1 + 223246 0.77 0.175086
Target:  5'- aGGCGGUGUGGUaGUCGGCuGCGUuuGGu -3'
miRNA:   3'- -CCGCCGCGCCG-CGGCUGuCGCAggCC- -5'
15828 3' -64.1 NC_004065.1 + 101538 0.77 0.18705
Target:  5'- aGGCGGCagcagcaGCGGCGCUGGCAGUGguagCCu- -3'
miRNA:   3'- -CCGCCG-------CGCCGCGGCUGUCGCa---GGcc -5'
15828 3' -64.1 NC_004065.1 + 171961 0.77 0.191773
Target:  5'- gGGCGGUgGCGGCGgCGGCGGCGga-GGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggCC- -5'
15828 3' -64.1 NC_004065.1 + 68543 0.75 0.234465
Target:  5'- aGGCGGCgGCGGaGgUGACGGCGUCCc- -3'
miRNA:   3'- -CCGCCG-CGCCgCgGCUGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 139851 0.76 0.205189
Target:  5'- aGGCgGGCGaCGGCGgaGGCGGCGgagCCGGc -3'
miRNA:   3'- -CCG-CCGC-GCCGCggCUGUCGCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 80797 0.77 0.191773
Target:  5'- cGGCGGCgGCGGCGgCGGCAGCGg---- -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggcc -5'
15828 3' -64.1 NC_004065.1 + 31915 0.86 0.048095
Target:  5'- cGCGGCGCGuCGCCGACAGCGUgCCGa -3'
miRNA:   3'- cCGCCGCGCcGCGGCUGUCGCA-GGCc -5'
15828 3' -64.1 NC_004065.1 + 163263 0.76 0.205189
Target:  5'- cGGCGGCGcCGGCGCCucCucGCGauUCCGGu -3'
miRNA:   3'- -CCGCCGC-GCCGCGGcuGu-CGC--AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 116323 0.82 0.084288
Target:  5'- cGGCGGCgGCaGCGgCGACGGCGUCgGGa -3'
miRNA:   3'- -CCGCCG-CGcCGCgGCUGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 151359 0.77 0.187475
Target:  5'- gGGCGcCGCGGCGCCGGCcgcuGCG-CUGGc -3'
miRNA:   3'- -CCGCcGCGCCGCGGCUGu---CGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 156300 0.76 0.21941
Target:  5'- cGGCGGCagcaGUGGCGCCaGCAGCGgcggCGGa -3'
miRNA:   3'- -CCGCCG----CGCCGCGGcUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 138821 0.74 0.26717
Target:  5'- cGGCGGCGCcGaugccgcgcaCGCCGACGGCGcuUCCGcGg -3'
miRNA:   3'- -CCGCCGCGcC----------GCGGCUGUCGC--AGGC-C- -5'
15828 3' -64.1 NC_004065.1 + 80380 0.81 0.10688
Target:  5'- uGCGGCGCGuGCagggccuGCCGACGGCG-CCGGu -3'
miRNA:   3'- cCGCCGCGC-CG-------CGGCUGUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 59572 0.78 0.163432
Target:  5'- cGGCGGCaGCgaaGGCGCCuccGGCGGCGUCCu- -3'
miRNA:   3'- -CCGCCG-CG---CCGCGG---CUGUCGCAGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.