miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 186905 0.74 0.278863
Target:  5'- cGGCGGUcuucGCGaGCGCgGAuCGGCG-CCGGg -3'
miRNA:   3'- -CCGCCG----CGC-CGCGgCU-GUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 187404 0.74 0.26717
Target:  5'- cGCGGUGUGGCGUCGAgGGCGagCGc -3'
miRNA:   3'- cCGCCGCGCCGCGGCUgUCGCagGCc -5'
15828 3' -64.1 NC_004065.1 + 80797 0.77 0.191773
Target:  5'- cGGCGGCgGCGGCGgCGGCAGCGg---- -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggcc -5'
15828 3' -64.1 NC_004065.1 + 80380 0.81 0.10688
Target:  5'- uGCGGCGCGuGCagggccuGCCGACGGCG-CCGGu -3'
miRNA:   3'- cCGCCGCGC-CG-------CGGCUGUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 28471 0.72 0.364798
Target:  5'- aGCGGCgaguuGUGGCgucugGCCGACAGCGcCgCGGa -3'
miRNA:   3'- cCGCCG-----CGCCG-----CGGCUGUCGCaG-GCC- -5'
15828 3' -64.1 NC_004065.1 + 136610 0.73 0.329027
Target:  5'- uGGgGuGCGgGGCGCUgguccgaGGCGGCGgUCCGGa -3'
miRNA:   3'- -CCgC-CGCgCCGCGG-------CUGUCGC-AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 83420 0.75 0.239672
Target:  5'- -aCGGCGUccagGGUGUCGACGGCGUugCCGGg -3'
miRNA:   3'- ccGCCGCG----CCGCGGCUGUCGCA--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 116323 0.82 0.084288
Target:  5'- cGGCGGCgGCaGCGgCGACGGCGUCgGGa -3'
miRNA:   3'- -CCGCCG-CGcCGCgGCUGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 165083 0.73 0.32299
Target:  5'- aGGCGGUGggucaguaGGCGCCGucgucucugagGCGGCGUCCc- -3'
miRNA:   3'- -CCGCCGCg-------CCGCGGC-----------UGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 31915 0.86 0.048095
Target:  5'- cGCGGCGCGuCGCCGACAGCGUgCCGa -3'
miRNA:   3'- cCGCCGCGCcGCGGCUGUCGCA-GGCc -5'
15828 3' -64.1 NC_004065.1 + 138821 0.74 0.26717
Target:  5'- cGGCGGCGCcGaugccgcgcaCGCCGACGGCGcuUCCGcGg -3'
miRNA:   3'- -CCGCCGCGcC----------GCGGCUGUCGC--AGGC-C- -5'
15828 3' -64.1 NC_004065.1 + 184483 0.74 0.290346
Target:  5'- gGGCGGCugccgccgccgccGCGGCGCCGGguGgcguagacCGUCCGa -3'
miRNA:   3'- -CCGCCG-------------CGCCGCGGCUguC--------GCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 163263 0.76 0.205189
Target:  5'- cGGCGGCGcCGGCGCCucCucGCGauUCCGGu -3'
miRNA:   3'- -CCGCCGC-GCCGCGGcuGu-CGC--AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 171961 0.77 0.191773
Target:  5'- gGGCGGUgGCGGCGgCGGCGGCGga-GGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggCC- -5'
15828 3' -64.1 NC_004065.1 + 223246 0.77 0.175086
Target:  5'- aGGCGGUGUGGUaGUCGGCuGCGUuuGGu -3'
miRNA:   3'- -CCGCCGCGCCG-CGGCUGuCGCAggCC- -5'
15828 3' -64.1 NC_004065.1 + 79356 0.8 0.120634
Target:  5'- gGGCGGCGCGGCGCUGgaACAGUucgagaUCUGGg -3'
miRNA:   3'- -CCGCCGCGCCGCGGC--UGUCGc-----AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 120346 0.71 0.394678
Target:  5'- cGGCGGCGauGuCGUCGGagAGCGcCCGGa -3'
miRNA:   3'- -CCGCCGCgcC-GCGGCUg-UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 187032 0.72 0.364798
Target:  5'- cGGCGGCGCGGCGuCUGAgGugauGCGUagcaCCGc -3'
miRNA:   3'- -CCGCCGCGCCGC-GGCUgU----CGCA----GGCc -5'
15828 3' -64.1 NC_004065.1 + 4381 0.72 0.357576
Target:  5'- cGGCGGCgGCGGgaGCCgGAguGCuGUUCGGa -3'
miRNA:   3'- -CCGCCG-CGCCg-CGG-CUguCG-CAGGCC- -5'
15828 3' -64.1 NC_004065.1 + 136660 0.73 0.34274
Target:  5'- uGGUGGCGagcgacgGGCgggucugGCCGGCGGCGggCCGGc -3'
miRNA:   3'- -CCGCCGCg------CCG-------CGGCUGUCGCa-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.