miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 119840 0.72 0.357576
Target:  5'- cGGCGGCGCGucGCgGCCGccGCAGagGUCgGGg -3'
miRNA:   3'- -CCGCCGCGC--CG-CGGC--UGUCg-CAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 83420 0.75 0.239672
Target:  5'- -aCGGCGUccagGGUGUCGACGGCGUugCCGGg -3'
miRNA:   3'- ccGCCGCG----CCGCGGCUGUCGCA--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 116323 0.82 0.084288
Target:  5'- cGGCGGCgGCaGCGgCGACGGCGUCgGGa -3'
miRNA:   3'- -CCGCCG-CGcCGCgGCUGUCGCAGgCC- -5'
15828 3' -64.1 NC_004065.1 + 65329 0.72 0.357576
Target:  5'- cGGCGGCgGCGGCGgCaGCAGC-UgCGGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGcUGUCGcAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 31915 0.86 0.048095
Target:  5'- cGCGGCGCGuCGCCGACAGCGUgCCGa -3'
miRNA:   3'- cCGCCGCGCcGCGGCUGUCGCA-GGCc -5'
15828 3' -64.1 NC_004065.1 + 205438 0.7 0.484461
Target:  5'- cGGCGGUgGCGGCGaCGACAcGCG--CGGa -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGU-CGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 79356 0.8 0.120634
Target:  5'- gGGCGGCGCGGCGCUGgaACAGUucgagaUCUGGg -3'
miRNA:   3'- -CCGCCGCGCCGCGGC--UGUCGc-----AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 6913 0.7 0.475028
Target:  5'- cGGCGGCuucagcuGCGG-GCaCGGCcucGGCGUCCGc -3'
miRNA:   3'- -CCGCCG-------CGCCgCG-GCUG---UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 66642 0.7 0.450612
Target:  5'- cGuCGGCuuCGGCGCgGugGGCGcCCGGc -3'
miRNA:   3'- cC-GCCGc-GCCGCGgCugUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 86921 0.71 0.426096
Target:  5'- cGGCGGCGCGcGCGUCGAaaacgaagaCGGUGgagaggaccUCCGa -3'
miRNA:   3'- -CCGCCGCGC-CGCGGCU---------GUCGC---------AGGCc -5'
15828 3' -64.1 NC_004065.1 + 141651 0.71 0.418103
Target:  5'- gGGCGGUgGCGGUGCCG-CGGCcg-CGGa -3'
miRNA:   3'- -CCGCCG-CGCCGCGGCuGUCGcagGCC- -5'
15828 3' -64.1 NC_004065.1 + 120346 0.71 0.394678
Target:  5'- cGGCGGCGauGuCGUCGGagAGCGcCCGGa -3'
miRNA:   3'- -CCGCCGCgcC-GCGGCUg-UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 187032 0.72 0.364798
Target:  5'- cGGCGGCGCGGCGuCUGAgGugauGCGUagcaCCGc -3'
miRNA:   3'- -CCGCCGCGCCGC-GGCUgU----CGCA----GGCc -5'
15828 3' -64.1 NC_004065.1 + 161844 0.73 0.343436
Target:  5'- aGCGGCG-GG-GCCGACAGC-UCCGu -3'
miRNA:   3'- cCGCCGCgCCgCGGCUGUCGcAGGCc -5'
15828 3' -64.1 NC_004065.1 + 165083 0.73 0.32299
Target:  5'- aGGCGGUGggucaguaGGCGCCGucgucucugagGCGGCGUCCc- -3'
miRNA:   3'- -CCGCCGCg-------CCGCGGC-----------UGUCGCAGGcc -5'
15828 3' -64.1 NC_004065.1 + 186905 0.74 0.278863
Target:  5'- cGGCGGUcuucGCGaGCGCgGAuCGGCG-CCGGg -3'
miRNA:   3'- -CCGCCG----CGC-CGCGgCU-GUCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 187404 0.74 0.26717
Target:  5'- cGCGGUGUGGCGUCGAgGGCGagCGc -3'
miRNA:   3'- cCGCCGCGCCGCGGCUgUCGCagGCc -5'
15828 3' -64.1 NC_004065.1 + 163263 0.76 0.205189
Target:  5'- cGGCGGCGcCGGCGCCucCucGCGauUCCGGu -3'
miRNA:   3'- -CCGCCGC-GCCGCGGcuGu-CGC--AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 171961 0.77 0.191773
Target:  5'- gGGCGGUgGCGGCGgCGGCGGCGga-GGg -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGUCGCaggCC- -5'
15828 3' -64.1 NC_004065.1 + 223246 0.77 0.175086
Target:  5'- aGGCGGUGUGGUaGUCGGCuGCGUuuGGu -3'
miRNA:   3'- -CCGCCGCGCCG-CGGCUGuCGCAggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.