miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 3' -64.1 NC_004065.1 + 187032 0.72 0.364798
Target:  5'- cGGCGGCGCGGCGuCUGAgGugauGCGUagcaCCGc -3'
miRNA:   3'- -CCGCCGCGCCGC-GGCUgU----CGCA----GGCc -5'
15828 3' -64.1 NC_004065.1 + 80318 0.71 0.402392
Target:  5'- gGGcCGGCGCGGCcgcgGCCcccCGGCGUUCGa -3'
miRNA:   3'- -CC-GCCGCGCCG----CGGcu-GUCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 59740 0.8 0.126464
Target:  5'- cGGCGGCGaUGGUGCCGACcGCGUggCCGa -3'
miRNA:   3'- -CCGCCGC-GCCGCGGCUGuCGCA--GGCc -5'
15828 3' -64.1 NC_004065.1 + 101538 0.77 0.18705
Target:  5'- aGGCGGCagcagcaGCGGCGCUGGCAGUGguagCCu- -3'
miRNA:   3'- -CCGCCG-------CGCCGCGGCUGUCGCa---GGcc -5'
15828 3' -64.1 NC_004065.1 + 198026 0.76 0.200629
Target:  5'- aGGCGGuCGCGGuCGCCGGCGGU-UCCa- -3'
miRNA:   3'- -CCGCC-GCGCC-GCGGCUGUCGcAGGcc -5'
15828 3' -64.1 NC_004065.1 + 156300 0.76 0.21941
Target:  5'- cGGCGGCagcaGUGGCGCCaGCAGCGgcggCGGa -3'
miRNA:   3'- -CCGCCG----CGCCGCGGcUGUCGCag--GCC- -5'
15828 3' -64.1 NC_004065.1 + 77111 0.74 0.272966
Target:  5'- cGGCGGCaGCGcCGCCGACAuCGUCagaCGGg -3'
miRNA:   3'- -CCGCCG-CGCcGCGGCUGUcGCAG---GCC- -5'
15828 3' -64.1 NC_004065.1 + 184483 0.74 0.290346
Target:  5'- gGGCGGCugccgccgccgccGCGGCGCCGGguGgcguagacCGUCCGa -3'
miRNA:   3'- -CCGCCG-------------CGCCGCGGCUguC--------GCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 136610 0.73 0.329027
Target:  5'- uGGgGuGCGgGGCGCUgguccgaGGCGGCGgUCCGGa -3'
miRNA:   3'- -CCgC-CGCgCCGCGG-------CUGUCGC-AGGCC- -5'
15828 3' -64.1 NC_004065.1 + 153641 0.72 0.349749
Target:  5'- cGGCGGCgagcucauccgcgGCGGCGCCGGC-GCGa-UGGa -3'
miRNA:   3'- -CCGCCG-------------CGCCGCGGCUGuCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 78858 0.68 0.552728
Target:  5'- gGGCGGCcggcgcgccagcucGCGGuCGCCGACgaucaucgcGGCGUugCCGc -3'
miRNA:   3'- -CCGCCG--------------CGCC-GCGGCUG---------UCGCA--GGCc -5'
15828 3' -64.1 NC_004065.1 + 185474 0.69 0.546384
Target:  5'- uGGUGGUGCGG-GUCGggagGCAGCG-CCGc -3'
miRNA:   3'- -CCGCCGCGCCgCGGC----UGUCGCaGGCc -5'
15828 3' -64.1 NC_004065.1 + 201498 0.71 0.426096
Target:  5'- uGCGGCG-GGCGCUacucucgucaGGCAGCGggCGGa -3'
miRNA:   3'- cCGCCGCgCCGCGG----------CUGUCGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 100606 0.7 0.442353
Target:  5'- uGGCGGuCGCGGCcuugaaccaGCCGACguuaauguugucGGUGUUCGa -3'
miRNA:   3'- -CCGCC-GCGCCG---------CGGCUG------------UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 6913 0.7 0.475028
Target:  5'- cGGCGGCuucagcuGCGG-GCaCGGCcucGGCGUCCGc -3'
miRNA:   3'- -CCGCCG-------CGCCgCG-GCUG---UCGCAGGCc -5'
15828 3' -64.1 NC_004065.1 + 205438 0.7 0.484461
Target:  5'- cGGCGGUgGCGGCGaCGACAcGCG--CGGa -3'
miRNA:   3'- -CCGCCG-CGCCGCgGCUGU-CGCagGCC- -5'
15828 3' -64.1 NC_004065.1 + 35568 0.7 0.493114
Target:  5'- cGGCGGCGCcgccGUGCCcaaccgcuucGACcgaGGCGcCCGGg -3'
miRNA:   3'- -CCGCCGCGc---CGCGG----------CUG---UCGCaGGCC- -5'
15828 3' -64.1 NC_004065.1 + 177482 0.69 0.501837
Target:  5'- cGGCGG-G-GGCGCaCGGCGGgGccgCCGGg -3'
miRNA:   3'- -CCGCCgCgCCGCG-GCUGUCgCa--GGCC- -5'
15828 3' -64.1 NC_004065.1 + 107526 0.69 0.519481
Target:  5'- aGGUGcGCGCGGCGaCCGccCAGC-UgCGGg -3'
miRNA:   3'- -CCGC-CGCGCCGC-GGCu-GUCGcAgGCC- -5'
15828 3' -64.1 NC_004065.1 + 184822 0.69 0.528394
Target:  5'- uGGCGGUgGCGGCaG-CGGCGGCGUguugccccugUCGGa -3'
miRNA:   3'- -CCGCCG-CGCCG-CgGCUGUCGCA----------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.