miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15828 5' -60.2 NC_004065.1 + 49584 0.68 0.679603
Target:  5'- cGCGAcGAGaaagCCCGGGuccCUGACGAAc -3'
miRNA:   3'- uCGCU-CUCga--GGGCCCuc-GACUGCUU- -5'
15828 5' -60.2 NC_004065.1 + 169792 0.68 0.66986
Target:  5'- gAGCGGGAacgggaacggGCU-CUGGGAGCUuGACGGg -3'
miRNA:   3'- -UCGCUCU----------CGAgGGCCCUCGA-CUGCUu -5'
15828 5' -60.2 NC_004065.1 + 149018 0.69 0.640492
Target:  5'- cGGCGAucggaaccucGGGCUgacCUCGGGAGCgGGCGAc -3'
miRNA:   3'- -UCGCU----------CUCGA---GGGCCCUCGaCUGCUu -5'
15828 5' -60.2 NC_004065.1 + 131708 0.69 0.600303
Target:  5'- uGCGAGAucaGCUCCUGGGAGgcCUugauuacGACGAAu -3'
miRNA:   3'- uCGCUCU---CGAGGGCCCUC--GA-------CUGCUU- -5'
15828 5' -60.2 NC_004065.1 + 30105 0.69 0.598348
Target:  5'- uAGCGAGAGCUgcagcCCCGGcGGCcuggggagggcgggUGGCGGAg -3'
miRNA:   3'- -UCGCUCUCGA-----GGGCCcUCG--------------ACUGCUU- -5'
15828 5' -60.2 NC_004065.1 + 112562 0.69 0.640492
Target:  5'- uGGCGGcGAGCggCCGcGGAGCcgGACGAc -3'
miRNA:   3'- -UCGCU-CUCGagGGC-CCUCGa-CUGCUu -5'
15828 5' -60.2 NC_004065.1 + 211346 0.7 0.543206
Target:  5'- cGGUGGuGGGCgaaUCCGGGAccGCUGGCGAAg -3'
miRNA:   3'- -UCGCU-CUCGa--GGGCCCU--CGACUGCUU- -5'
15828 5' -60.2 NC_004065.1 + 61334 0.7 0.572068
Target:  5'- cGGCGAGAGCcgcggcgaCCCGGGcGaaGACGGAg -3'
miRNA:   3'- -UCGCUCUCGa-------GGGCCCuCgaCUGCUU- -5'
15828 5' -60.2 NC_004065.1 + 80066 0.73 0.384173
Target:  5'- uAGCagGAGAGCUCuuGGGAGagGACGGAg -3'
miRNA:   3'- -UCG--CUCUCGAGggCCCUCgaCUGCUU- -5'
15828 5' -60.2 NC_004065.1 + 99701 1.06 0.002668
Target:  5'- gAGCGAGAGCUCCCGGGAGCUGACGAAg -3'
miRNA:   3'- -UCGCUCUCGAGGGCCCUCGACUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.