Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15828 | 5' | -60.2 | NC_004065.1 | + | 139834 | 0.66 | 0.81697 |
Target: 5'- cGGCcuGGAG-UCCCGGGAgGCgGGCGAc -3' miRNA: 3'- -UCGc-UCUCgAGGGCCCU-CGaCUGCUu -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 143064 | 0.67 | 0.718138 |
Target: 5'- gGGCGAGgGGCgcuUCGGGGGC-GACGAGc -3' miRNA: 3'- -UCGCUC-UCGag-GGCCCUCGaCUGCUU- -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 143350 | 0.66 | 0.81697 |
Target: 5'- gGGCGAGGGaacaCUGGGGGg-GACGAGg -3' miRNA: 3'- -UCGCUCUCgag-GGCCCUCgaCUGCUU- -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 149018 | 0.69 | 0.640492 |
Target: 5'- cGGCGAucggaaccucGGGCUgacCUCGGGAGCgGGCGAc -3' miRNA: 3'- -UCGCU----------CUCGA---GGGCCCUCGaCUGCUu -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 163333 | 0.67 | 0.764723 |
Target: 5'- cGGUc-GAGCUCCUgucucuuggGGGGGCUGugGGGg -3' miRNA: 3'- -UCGcuCUCGAGGG---------CCCUCGACugCUU- -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 169792 | 0.68 | 0.66986 |
Target: 5'- gAGCGGGAacgggaacggGCU-CUGGGAGCUuGACGGg -3' miRNA: 3'- -UCGCUCU----------CGAgGGCCCUCGA-CUGCUu -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 185831 | 0.68 | 0.679603 |
Target: 5'- uAGUGAGAGuCUCucggguCCGGGGGCgUGAgGGAc -3' miRNA: 3'- -UCGCUCUC-GAG------GGCCCUCG-ACUgCUU- -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 206890 | 0.68 | 0.66986 |
Target: 5'- gAGUGGGAuuCUCCCGGGAcCgUGACGAu -3' miRNA: 3'- -UCGCUCUc-GAGGGCCCUcG-ACUGCUu -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 211346 | 0.7 | 0.543206 |
Target: 5'- cGGUGGuGGGCgaaUCCGGGAccGCUGGCGAAg -3' miRNA: 3'- -UCGCU-CUCGa--GGGCCCU--CGACUGCUU- -5' |
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15828 | 5' | -60.2 | NC_004065.1 | + | 224458 | 0.67 | 0.746357 |
Target: 5'- gGGcCGGGcAGCUCaaCCGGGAGCUGGu--- -3' miRNA: 3'- -UC-GCUC-UCGAG--GGCCCUCGACUgcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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