Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15828 | 5' | -60.2 | NC_004065.1 | + | 44267 | 0.66 | 0.81697 |
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Target: 5'- gAGCGAgcGAGCgaacgaCCGGGcgGGCgGGCGAGa -3' miRNA: 3'- -UCGCU--CUCGag----GGCCC--UCGaCUGCUU- -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 77854 | 0.67 | 0.737032 |
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Target: 5'- cGGCGuGGGCUCCCcGGugcacauGCUGGCa-- -3' miRNA: 3'- -UCGCuCUCGAGGGcCCu------CGACUGcuu -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 102657 | 0.67 | 0.727623 |
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Target: 5'- cGGCGAGAuCUCUCGGGugagauuguaggAGUUGACGc- -3' miRNA: 3'- -UCGCUCUcGAGGGCCC------------UCGACUGCuu -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 143064 | 0.67 | 0.718138 |
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Target: 5'- gGGCGAGgGGCgcuUCGGGGGC-GACGAGc -3' miRNA: 3'- -UCGCUC-UCGag-GGCCCUCGaCUGCUU- -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 108723 | 0.68 | 0.68931 |
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Target: 5'- uGCGGGGccGCUgCCCGGuGAGCauccUGGCGAu -3' miRNA: 3'- uCGCUCU--CGA-GGGCC-CUCG----ACUGCUu -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 206890 | 0.68 | 0.66986 |
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Target: 5'- gAGUGGGAuuCUCCCGGGAcCgUGACGAu -3' miRNA: 3'- -UCGCUCUc-GAGGGCCCUcG-ACUGCUu -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 112562 | 0.69 | 0.640492 |
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Target: 5'- uGGCGGcGAGCggCCGcGGAGCcgGACGAc -3' miRNA: 3'- -UCGCU-CUCGagGGC-CCUCGa-CUGCUu -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 211346 | 0.7 | 0.543206 |
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Target: 5'- cGGUGGuGGGCgaaUCCGGGAccGCUGGCGAAg -3' miRNA: 3'- -UCGCU-CUCGa--GGGCCCU--CGACUGCUU- -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 99701 | 1.06 | 0.002668 |
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Target: 5'- gAGCGAGAGCUCCCGGGAGCUGACGAAg -3' miRNA: 3'- -UCGCUCUCGAGGGCCCUCGACUGCUU- -5' |
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| 15828 | 5' | -60.2 | NC_004065.1 | + | 139834 | 0.66 | 0.81697 |
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Target: 5'- cGGCcuGGAG-UCCCGGGAgGCgGGCGAc -3' miRNA: 3'- -UCGc-UCUCgAGGGCCCU-CGaCUGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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