miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15829 3' -54.6 NC_004065.1 + 141463 0.66 0.987599
Target:  5'- cCCGAGAUCgaCGACAUCcuCUUCUacGUGg -3'
miRNA:   3'- -GGCUCUGGg-GCUGUAGcuGAAGA--CGC- -5'
15829 3' -54.6 NC_004065.1 + 67501 0.66 0.987599
Target:  5'- uCCGAGA-CCUGGCccggCGGCUcgUGCGg -3'
miRNA:   3'- -GGCUCUgGGGCUGua--GCUGAagACGC- -5'
15829 3' -54.6 NC_004065.1 + 135071 0.66 0.987599
Target:  5'- gCCGcggagcGGGCCCCG-CAgcgccaguagUCGGCUgCUGCa -3'
miRNA:   3'- -GGC------UCUGGGGCuGU----------AGCUGAaGACGc -5'
15829 3' -54.6 NC_004065.1 + 130063 0.66 0.987599
Target:  5'- cCCGAGcacGCCgCGGCGguggUCGACUaCgGCGa -3'
miRNA:   3'- -GGCUC---UGGgGCUGU----AGCUGAaGaCGC- -5'
15829 3' -54.6 NC_004065.1 + 66622 0.66 0.987599
Target:  5'- gCCGAcGCuCUCGGCgacaucGUCGGCUUCgGCGc -3'
miRNA:   3'- -GGCUcUG-GGGCUG------UAGCUGAAGaCGC- -5'
15829 3' -54.6 NC_004065.1 + 136030 0.66 0.987599
Target:  5'- aCCGGGACCCCGAaaagcCGGCcaggGUGc -3'
miRNA:   3'- -GGCUCUGGGGCUgua--GCUGaagaCGC- -5'
15829 3' -54.6 NC_004065.1 + 80960 0.66 0.987599
Target:  5'- aCGAcGACCCCGA--UCGGC--CUGCc -3'
miRNA:   3'- gGCU-CUGGGGCUguAGCUGaaGACGc -5'
15829 3' -54.6 NC_004065.1 + 16581 0.66 0.987452
Target:  5'- cCCGAGACuacggagCCCGAUAccUCuACcgCUGCGg -3'
miRNA:   3'- -GGCUCUG-------GGGCUGU--AGcUGaaGACGC- -5'
15829 3' -54.6 NC_004065.1 + 46559 0.66 0.98607
Target:  5'- cCCGAGAUCCUGAa--CGACaugCUGUu -3'
miRNA:   3'- -GGCUCUGGGGCUguaGCUGaa-GACGc -5'
15829 3' -54.6 NC_004065.1 + 77974 0.66 0.98607
Target:  5'- cCCGAGACgCUGGCcgCGGCgagCcGCc -3'
miRNA:   3'- -GGCUCUGgGGCUGuaGCUGaa-GaCGc -5'
15829 3' -54.6 NC_004065.1 + 62851 0.66 0.98607
Target:  5'- cCCGaAGGcucCCCCGGCAgcggugUGGCggUCUGCu -3'
miRNA:   3'- -GGC-UCU---GGGGCUGUa-----GCUGa-AGACGc -5'
15829 3' -54.6 NC_004065.1 + 28116 0.66 0.984401
Target:  5'- aCCGuugaagaaAGACCCggucugggaCGcCAUCGGCcUCUGCGu -3'
miRNA:   3'- -GGC--------UCUGGG---------GCuGUAGCUGaAGACGC- -5'
15829 3' -54.6 NC_004065.1 + 143710 0.66 0.984401
Target:  5'- aCGAGACCaggucggcgCCGGCGagcgagaCGACUUCgUGCa -3'
miRNA:   3'- gGCUCUGG---------GGCUGUa------GCUGAAG-ACGc -5'
15829 3' -54.6 NC_004065.1 + 136047 0.66 0.984401
Target:  5'- uCUGGGugcuUCCCGGC---GGCUUCUGCGc -3'
miRNA:   3'- -GGCUCu---GGGGCUGuagCUGAAGACGC- -5'
15829 3' -54.6 NC_004065.1 + 115167 0.66 0.984401
Target:  5'- gUCGGGcgccgcGCCCCGACGUCuccuCUUcCUGCc -3'
miRNA:   3'- -GGCUC------UGGGGCUGUAGcu--GAA-GACGc -5'
15829 3' -54.6 NC_004065.1 + 204795 0.66 0.980611
Target:  5'- gCCGAcucGAUCCCGGgcuuCGUCGGCaUCgGCGc -3'
miRNA:   3'- -GGCU---CUGGGGCU----GUAGCUGaAGaCGC- -5'
15829 3' -54.6 NC_004065.1 + 65077 0.67 0.978698
Target:  5'- -gGGGAUCgCGACAgauacacgcguucaaCGACUUCUGUGu -3'
miRNA:   3'- ggCUCUGGgGCUGUa--------------GCUGAAGACGC- -5'
15829 3' -54.6 NC_004065.1 + 63882 0.67 0.978477
Target:  5'- gCCGcuGCCgCCGGCGcCGACgucUCUGCc -3'
miRNA:   3'- -GGCucUGG-GGCUGUaGCUGa--AGACGc -5'
15829 3' -54.6 NC_004065.1 + 99309 0.67 0.978477
Target:  5'- --uAGGCCCCGAUGUCGAUguugGUGg -3'
miRNA:   3'- ggcUCUGGGGCUGUAGCUGaagaCGC- -5'
15829 3' -54.6 NC_004065.1 + 31532 0.67 0.978477
Target:  5'- gCGGGgcuACCCCGGCAUgGAg--CUGCu -3'
miRNA:   3'- gGCUC---UGGGGCUGUAgCUgaaGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.