Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15829 | 5' | -62.7 | NC_004065.1 | + | 78813 | 0.66 | 0.706291 |
Target: 5'- cCGCGCCGgcgguaCCGGUGaUCAGGaGG-CGGa -3' miRNA: 3'- -GCGCGGC------GGCUAC-AGUCCcCCaGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 151380 | 0.66 | 0.724696 |
Target: 5'- uGCGCUggcgGCCGAUcUCuuggguggcggAGGcGGGUCGGUc -3' miRNA: 3'- gCGCGG----CGGCUAcAG-----------UCC-CCCAGCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 195806 | 0.66 | 0.724696 |
Target: 5'- uGCGCUGaaGG-GUCGGGuGGGaCGGUg -3' miRNA: 3'- gCGCGGCggCUaCAGUCC-CCCaGCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 173912 | 0.66 | 0.7338 |
Target: 5'- aGCGCCGCCGucGUCcGGGacGGUCa-- -3' miRNA: 3'- gCGCGGCGGCuaCAGuCCC--CCAGcca -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 191180 | 0.66 | 0.7338 |
Target: 5'- gGCGucCCGCggcaGAUGUgGaggcuGGGGGUCGGg -3' miRNA: 3'- gCGC--GGCGg---CUACAgU-----CCCCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 147522 | 0.66 | 0.751774 |
Target: 5'- gGgGCCaCCGAUG--AGGGGGucUCGGUc -3' miRNA: 3'- gCgCGGcGGCUACagUCCCCC--AGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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