Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15829 | 5' | -62.7 | NC_004065.1 | + | 98837 | 1.06 | 0.002123 |
Target: 5'- uCGCGCCGCCGAUGUCAGGGGGUCGGUc -3' miRNA: 3'- -GCGCGGCGGCUACAGUCCCCCAGCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 138242 | 0.77 | 0.210191 |
Target: 5'- gGCGCuCGCCGccGUCgAGGaGGGUCGGg -3' miRNA: 3'- gCGCG-GCGGCuaCAG-UCC-CCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 77118 | 0.77 | 0.213571 |
Target: 5'- aGCGCCGCCGAcaucGUCAGacggggcugcgguuGGGGUUGGg -3' miRNA: 3'- gCGCGGCGGCUa---CAGUC--------------CCCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 109883 | 0.74 | 0.326194 |
Target: 5'- gGCGUCGCCGcggccgcGUCGGGGGGUCccGGc -3' miRNA: 3'- gCGCGGCGGCua-----CAGUCCCCCAG--CCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 32882 | 0.73 | 0.368436 |
Target: 5'- uCGCGCUccucguccgagauGCCGuccUGUC-GGGGGUCGGa -3' miRNA: 3'- -GCGCGG-------------CGGCu--ACAGuCCCCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 89731 | 0.72 | 0.399924 |
Target: 5'- uGCGCCGUCG---UCAGGGGGUUGu- -3' miRNA: 3'- gCGCGGCGGCuacAGUCCCCCAGCca -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 67654 | 0.7 | 0.510135 |
Target: 5'- aCGCGUCGgUGAUGUCGGGGagcGG-CGGc -3' miRNA: 3'- -GCGCGGCgGCUACAGUCCC---CCaGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 166383 | 0.7 | 0.519165 |
Target: 5'- uGUGCCGUCGAg--CAGGGacaugcugcuGGUCGGg -3' miRNA: 3'- gCGCGGCGGCUacaGUCCC----------CCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 2742 | 0.7 | 0.528257 |
Target: 5'- uGUuCCgaGCgGAcGUCGGGGGGUCGGUc -3' miRNA: 3'- gCGcGG--CGgCUaCAGUCCCCCAGCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 122001 | 0.69 | 0.565165 |
Target: 5'- gGUGuuGUCGAagGUCGGGaGGUCGGg -3' miRNA: 3'- gCGCggCGGCUa-CAGUCCcCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 33282 | 0.68 | 0.593282 |
Target: 5'- gCGCaGCaCGCCGAUGUUGGGGuaGG-CGGc -3' miRNA: 3'- -GCG-CG-GCGGCUACAGUCCC--CCaGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 164344 | 0.68 | 0.621617 |
Target: 5'- aCGC-CCGCgCGAUGUCcucGGGcGUCGGa -3' miRNA: 3'- -GCGcGGCG-GCUACAGuc-CCC-CAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 197466 | 0.68 | 0.631084 |
Target: 5'- -aUGCCGCUGGUGgggUGGGGGGg-GGUg -3' miRNA: 3'- gcGCGGCGGCUACa--GUCCCCCagCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 131221 | 0.68 | 0.631084 |
Target: 5'- uGcCGCagaaGUCGAUGUCGGGGucUCGGUc -3' miRNA: 3'- gC-GCGg---CGGCUACAGUCCCccAGCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 149142 | 0.68 | 0.640551 |
Target: 5'- uCGaGUCGCCuGAUcuucGUCGGGGGGcCGGa -3' miRNA: 3'- -GCgCGGCGG-CUA----CAGUCCCCCaGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 98862 | 0.67 | 0.659462 |
Target: 5'- uGCGCUGCCGGaac--GGGGGUCGu- -3' miRNA: 3'- gCGCGGCGGCUacaguCCCCCAGCca -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 120520 | 0.67 | 0.678298 |
Target: 5'- gGCGCCGCucgaCGAUGUCgAGGGucUcCGGUg -3' miRNA: 3'- gCGCGGCG----GCUACAG-UCCCccA-GCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 102537 | 0.67 | 0.687671 |
Target: 5'- gCGCGCCuuguccucGUCGGUGgcgccGGGGUCGGg -3' miRNA: 3'- -GCGCGG--------CGGCUACaguc-CCCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 225404 | 0.67 | 0.687671 |
Target: 5'- aCGUGCCGuuGaAUGUUGGuGGcgaacGGUCGGUc -3' miRNA: 3'- -GCGCGGCggC-UACAGUC-CC-----CCAGCCA- -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 78813 | 0.66 | 0.706291 |
Target: 5'- cCGCGCCGgcgguaCCGGUGaUCAGGaGG-CGGa -3' miRNA: 3'- -GCGCGGC------GGCUAC-AGUCCcCCaGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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