Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15829 | 5' | -62.7 | NC_004065.1 | + | 89731 | 0.72 | 0.399924 |
Target: 5'- uGCGCCGUCG---UCAGGGGGUUGu- -3' miRNA: 3'- gCGCGGCGGCuacAGUCCCCCAGCca -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 32882 | 0.73 | 0.368436 |
Target: 5'- uCGCGCUccucguccgagauGCCGuccUGUC-GGGGGUCGGa -3' miRNA: 3'- -GCGCGG-------------CGGCu--ACAGuCCCCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 109883 | 0.74 | 0.326194 |
Target: 5'- gGCGUCGCCGcggccgcGUCGGGGGGUCccGGc -3' miRNA: 3'- gCGCGGCGGCua-----CAGUCCCCCAG--CCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 77118 | 0.77 | 0.213571 |
Target: 5'- aGCGCCGCCGAcaucGUCAGacggggcugcgguuGGGGUUGGg -3' miRNA: 3'- gCGCGGCGGCUa---CAGUC--------------CCCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 138242 | 0.77 | 0.210191 |
Target: 5'- gGCGCuCGCCGccGUCgAGGaGGGUCGGg -3' miRNA: 3'- gCGCG-GCGGCuaCAG-UCC-CCCAGCCa -5' |
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15829 | 5' | -62.7 | NC_004065.1 | + | 98837 | 1.06 | 0.002123 |
Target: 5'- uCGCGCCGCCGAUGUCAGGGGGUCGGUc -3' miRNA: 3'- -GCGCGGCGGCUACAGUCCCCCAGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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