miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15829 5' -62.7 NC_004065.1 + 2742 0.7 0.528257
Target:  5'- uGUuCCgaGCgGAcGUCGGGGGGUCGGUc -3'
miRNA:   3'- gCGcGG--CGgCUaCAGUCCCCCAGCCA- -5'
15829 5' -62.7 NC_004065.1 + 30093 0.66 0.706291
Target:  5'- aGCGCgCGCUGAugUGUCAGGGa--CGGa -3'
miRNA:   3'- gCGCG-GCGGCU--ACAGUCCCccaGCCa -5'
15829 5' -62.7 NC_004065.1 + 32882 0.73 0.368436
Target:  5'- uCGCGCUccucguccgagauGCCGuccUGUC-GGGGGUCGGa -3'
miRNA:   3'- -GCGCGG-------------CGGCu--ACAGuCCCCCAGCCa -5'
15829 5' -62.7 NC_004065.1 + 33282 0.68 0.593282
Target:  5'- gCGCaGCaCGCCGAUGUUGGGGuaGG-CGGc -3'
miRNA:   3'- -GCG-CG-GCGGCUACAGUCCC--CCaGCCa -5'
15829 5' -62.7 NC_004065.1 + 67654 0.7 0.510135
Target:  5'- aCGCGUCGgUGAUGUCGGGGagcGG-CGGc -3'
miRNA:   3'- -GCGCGGCgGCUACAGUCCC---CCaGCCa -5'
15829 5' -62.7 NC_004065.1 + 77118 0.77 0.213571
Target:  5'- aGCGCCGCCGAcaucGUCAGacggggcugcgguuGGGGUUGGg -3'
miRNA:   3'- gCGCGGCGGCUa---CAGUC--------------CCCCAGCCa -5'
15829 5' -62.7 NC_004065.1 + 78813 0.66 0.706291
Target:  5'- cCGCGCCGgcgguaCCGGUGaUCAGGaGG-CGGa -3'
miRNA:   3'- -GCGCGGC------GGCUAC-AGUCCcCCaGCCa -5'
15829 5' -62.7 NC_004065.1 + 89731 0.72 0.399924
Target:  5'- uGCGCCGUCG---UCAGGGGGUUGu- -3'
miRNA:   3'- gCGCGGCGGCuacAGUCCCCCAGCca -5'
15829 5' -62.7 NC_004065.1 + 98837 1.06 0.002123
Target:  5'- uCGCGCCGCCGAUGUCAGGGGGUCGGUc -3'
miRNA:   3'- -GCGCGGCGGCUACAGUCCCCCAGCCA- -5'
15829 5' -62.7 NC_004065.1 + 98862 0.67 0.659462
Target:  5'- uGCGCUGCCGGaac--GGGGGUCGu- -3'
miRNA:   3'- gCGCGGCGGCUacaguCCCCCAGCca -5'
15829 5' -62.7 NC_004065.1 + 102537 0.67 0.687671
Target:  5'- gCGCGCCuuguccucGUCGGUGgcgccGGGGUCGGg -3'
miRNA:   3'- -GCGCGG--------CGGCUACaguc-CCCCAGCCa -5'
15829 5' -62.7 NC_004065.1 + 109883 0.74 0.326194
Target:  5'- gGCGUCGCCGcggccgcGUCGGGGGGUCccGGc -3'
miRNA:   3'- gCGCGGCGGCua-----CAGUCCCCCAG--CCa -5'
15829 5' -62.7 NC_004065.1 + 120520 0.67 0.678298
Target:  5'- gGCGCCGCucgaCGAUGUCgAGGGucUcCGGUg -3'
miRNA:   3'- gCGCGGCG----GCUACAG-UCCCccA-GCCA- -5'
15829 5' -62.7 NC_004065.1 + 122001 0.69 0.565165
Target:  5'- gGUGuuGUCGAagGUCGGGaGGUCGGg -3'
miRNA:   3'- gCGCggCGGCUa-CAGUCCcCCAGCCa -5'
15829 5' -62.7 NC_004065.1 + 131221 0.68 0.631084
Target:  5'- uGcCGCagaaGUCGAUGUCGGGGucUCGGUc -3'
miRNA:   3'- gC-GCGg---CGGCUACAGUCCCccAGCCA- -5'
15829 5' -62.7 NC_004065.1 + 138242 0.77 0.210191
Target:  5'- gGCGCuCGCCGccGUCgAGGaGGGUCGGg -3'
miRNA:   3'- gCGCG-GCGGCuaCAG-UCC-CCCAGCCa -5'
15829 5' -62.7 NC_004065.1 + 147522 0.66 0.751774
Target:  5'- gGgGCCaCCGAUG--AGGGGGucUCGGUc -3'
miRNA:   3'- gCgCGGcGGCUACagUCCCCC--AGCCA- -5'
15829 5' -62.7 NC_004065.1 + 149142 0.68 0.640551
Target:  5'- uCGaGUCGCCuGAUcuucGUCGGGGGGcCGGa -3'
miRNA:   3'- -GCgCGGCGG-CUA----CAGUCCCCCaGCCa -5'
15829 5' -62.7 NC_004065.1 + 151380 0.66 0.724696
Target:  5'- uGCGCUggcgGCCGAUcUCuuggguggcggAGGcGGGUCGGUc -3'
miRNA:   3'- gCGCGG----CGGCUAcAG-----------UCC-CCCAGCCA- -5'
15829 5' -62.7 NC_004065.1 + 164344 0.68 0.621617
Target:  5'- aCGC-CCGCgCGAUGUCcucGGGcGUCGGa -3'
miRNA:   3'- -GCGcGGCG-GCUACAGuc-CCC-CAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.