miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1583 5' -58.3 NC_001347.2 + 22506 0.66 0.901752
Target:  5'- cGUGUGCaCGGGcUUuuGCGgagaaagGCGCGUCa -3'
miRNA:   3'- aCGCACGcGUCC-AGggCGU-------UGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 40985 0.66 0.896166
Target:  5'- cUGCuUGCGCacAGG-CCCGcCAACACcUCu -3'
miRNA:   3'- -ACGcACGCG--UCCaGGGC-GUUGUGcAG- -5'
1583 5' -58.3 NC_001347.2 + 87660 0.66 0.896166
Target:  5'- cGCGUGCGgauCAGG-CCCGaCAuccagaccgugaGCACcGUCu -3'
miRNA:   3'- aCGCACGC---GUCCaGGGC-GU------------UGUG-CAG- -5'
1583 5' -58.3 NC_001347.2 + 136464 0.66 0.894901
Target:  5'- gGCGcaUGCGCAGGgcgacccUCCCGCGggcccuggcccgcGCAUG-Cg -3'
miRNA:   3'- aCGC--ACGCGUCC-------AGGGCGU-------------UGUGCaG- -5'
1583 5' -58.3 NC_001347.2 + 142207 0.66 0.883136
Target:  5'- aGCGUGCGCgAGGagaUCCC----CGCGUCc -3'
miRNA:   3'- aCGCACGCG-UCC---AGGGcguuGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 184425 0.66 0.883136
Target:  5'- aGCG-GCGcCGGGUCgCUGUGACGgagcuCGUCg -3'
miRNA:   3'- aCGCaCGC-GUCCAG-GGCGUUGU-----GCAG- -5'
1583 5' -58.3 NC_001347.2 + 1239 0.66 0.883136
Target:  5'- cGCGccaUGCGCAaguGGUCgcagCGCGACGCGg- -3'
miRNA:   3'- aCGC---ACGCGU---CCAGg---GCGUUGUGCag -5'
1583 5' -58.3 NC_001347.2 + 90224 0.66 0.876309
Target:  5'- gGCGUG-GCGGcGUCguuuuUCGgAGCGCGUCg -3'
miRNA:   3'- aCGCACgCGUC-CAG-----GGCgUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 184233 0.66 0.876309
Target:  5'- aGCGUGuCGCAGcGUUcgCCGCcguuGC-CGUCg -3'
miRNA:   3'- aCGCAC-GCGUC-CAG--GGCGu---UGuGCAG- -5'
1583 5' -58.3 NC_001347.2 + 126393 0.66 0.876309
Target:  5'- -aCGUGCGCAGcUUCUGCAcGCGCGa- -3'
miRNA:   3'- acGCACGCGUCcAGGGCGU-UGUGCag -5'
1583 5' -58.3 NC_001347.2 + 228555 0.66 0.876309
Target:  5'- cGUGUGCGCGaaagccuGUgCCGCGGCAgCGUa -3'
miRNA:   3'- aCGCACGCGUc------CAgGGCGUUGU-GCAg -5'
1583 5' -58.3 NC_001347.2 + 38277 0.66 0.86928
Target:  5'- cGCGUGCGC--GUCCgCGUuaGGCACG-Ca -3'
miRNA:   3'- aCGCACGCGucCAGG-GCG--UUGUGCaG- -5'
1583 5' -58.3 NC_001347.2 + 187349 0.66 0.86928
Target:  5'- gUGCGuUGCGUGG---CCGUGGCGCGUCg -3'
miRNA:   3'- -ACGC-ACGCGUCcagGGCGUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 151721 0.67 0.862053
Target:  5'- cGUGUGCGUgucgAGGaCCUGguGCuuuCGUCg -3'
miRNA:   3'- aCGCACGCG----UCCaGGGCguUGu--GCAG- -5'
1583 5' -58.3 NC_001347.2 + 163633 0.67 0.862053
Target:  5'- cGCGgcUGCcCGGGUCgCGCAccaGCGUCu -3'
miRNA:   3'- aCGC--ACGcGUCCAGgGCGUug-UGCAG- -5'
1583 5' -58.3 NC_001347.2 + 157272 0.67 0.847027
Target:  5'- uUGCG-GCGCAgacgucggcGGUCCUccagcaGCAGCugGUg -3'
miRNA:   3'- -ACGCaCGCGU---------CCAGGG------CGUUGugCAg -5'
1583 5' -58.3 NC_001347.2 + 198084 0.67 0.83924
Target:  5'- cGCGgcgGuCGCGacggugacGGUCCCGCucguCGCGUUg -3'
miRNA:   3'- aCGCa--C-GCGU--------CCAGGGCGuu--GUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 185480 0.67 0.831278
Target:  5'- gGCGUuguggcGCGCAGGggcUCCGaCGugGCGUUa -3'
miRNA:   3'- aCGCA------CGCGUCCa--GGGC-GUugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 190780 0.67 0.831278
Target:  5'- uUGCGgcugaauCGCAGGUcguaCCCGCGcuGCGCGcUCg -3'
miRNA:   3'- -ACGCac-----GCGUCCA----GGGCGU--UGUGC-AG- -5'
1583 5' -58.3 NC_001347.2 + 200205 0.67 0.820677
Target:  5'- gGUGUGCGaCGGGcCCCcggGCucgcccacugacucGGCGCGUCa -3'
miRNA:   3'- aCGCACGC-GUCCaGGG---CG--------------UUGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.