Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1583 | 5' | -58.3 | NC_001347.2 | + | 183686 | 1.1 | 0.00237 |
Target: 5'- cUGCGUGCGCAGGUCCCGCAACACGUCg -3' miRNA: 3'- -ACGCACGCGUCCAGGGCGUUGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 37935 | 0.75 | 0.404662 |
Target: 5'- cGCGgcGCGCGGGUgCagguGCAGCGCGUCc -3' miRNA: 3'- aCGCa-CGCGUCCAgGg---CGUUGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 173700 | 0.74 | 0.474104 |
Target: 5'- gGCG-GCGguGGUUCCGguACGCGg- -3' miRNA: 3'- aCGCaCGCguCCAGGGCguUGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 221187 | 0.73 | 0.510993 |
Target: 5'- aGCGUGCGUguacGGUCCuCGCAggugGCACGg- -3' miRNA: 3'- aCGCACGCGu---CCAGG-GCGU----UGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 136156 | 0.72 | 0.558672 |
Target: 5'- aGCGgGCGCAGcGUgcggaCCGCAGCACGg- -3' miRNA: 3'- aCGCaCGCGUC-CAg----GGCGUUGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 155982 | 0.72 | 0.587886 |
Target: 5'- cGCG-GCGUauccucaaguuGGGUCCCaGCGagcuGCGCGUCa -3' miRNA: 3'- aCGCaCGCG-----------UCCAGGG-CGU----UGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 102457 | 0.71 | 0.60752 |
Target: 5'- cGCGUacGaCGCgAGGUCCCGC-GCACGg- -3' miRNA: 3'- aCGCA--C-GCG-UCCAGGGCGuUGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 198385 | 0.71 | 0.627222 |
Target: 5'- gGUGgcGCGCGGGUCgCGCAACAgCGg- -3' miRNA: 3'- aCGCa-CGCGUCCAGgGCGUUGU-GCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 194431 | 0.71 | 0.646938 |
Target: 5'- aGCGUGCgaGCGGGguucaCCUGCAGCGCu-- -3' miRNA: 3'- aCGCACG--CGUCCa----GGGCGUUGUGcag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 117901 | 0.7 | 0.66661 |
Target: 5'- gGCG-GCgGCGGGUCCCGUgauGGCAuCGUg -3' miRNA: 3'- aCGCaCG-CGUCCAGGGCG---UUGU-GCAg -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 157914 | 0.7 | 0.676411 |
Target: 5'- aGCG-GUGCAGacGUUuuGCGACACGUg -3' miRNA: 3'- aCGCaCGCGUC--CAGggCGUUGUGCAg -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 167272 | 0.7 | 0.686179 |
Target: 5'- uUGC-UGUGCAGGUCCCGauACAgGUa -3' miRNA: 3'- -ACGcACGCGUCCAGGGCguUGUgCAg -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 153202 | 0.7 | 0.690074 |
Target: 5'- cGCGgaagaugucGUGCAGGUCgUGCAgcgugaggcgcgggcGCGCGUCg -3' miRNA: 3'- aCGCa--------CGCGUCCAGgGCGU---------------UGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 162447 | 0.7 | 0.695904 |
Target: 5'- gGCGUGUuGCAGGgCCUGCu--GCGUCu -3' miRNA: 3'- aCGCACG-CGUCCaGGGCGuugUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 78378 | 0.7 | 0.70558 |
Target: 5'- gGCG-GCGCcguggugggAGGaCCCGCGGgcCACGUCg -3' miRNA: 3'- aCGCaCGCG---------UCCaGGGCGUU--GUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 145636 | 0.69 | 0.715199 |
Target: 5'- cUGCGgGUGUuucccggaGGGUCCgCGCGACACG-Ca -3' miRNA: 3'- -ACGCaCGCG--------UCCAGG-GCGUUGUGCaG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 2209 | 0.69 | 0.724752 |
Target: 5'- aGCGaUG-GCGGGUCCgGCG--GCGUCg -3' miRNA: 3'- aCGC-ACgCGUCCAGGgCGUugUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 98263 | 0.69 | 0.724752 |
Target: 5'- cGCGUGUGCGGcGUaccgcugauacUCUGCAACGCGcCc -3' miRNA: 3'- aCGCACGCGUC-CA-----------GGGCGUUGUGCaG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 78674 | 0.69 | 0.724752 |
Target: 5'- gGcCGUGCGCaAGG-CgCGCGACGCGg- -3' miRNA: 3'- aC-GCACGCG-UCCaGgGCGUUGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 53742 | 0.69 | 0.734231 |
Target: 5'- cGCGUGcCGCGGGUgCgCGCAGaagaAUGUUg -3' miRNA: 3'- aCGCAC-GCGUCCAgG-GCGUUg---UGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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