miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1583 5' -58.3 NC_001347.2 + 151721 0.67 0.862053
Target:  5'- cGUGUGCGUgucgAGGaCCUGguGCuuuCGUCg -3'
miRNA:   3'- aCGCACGCG----UCCaGGGCguUGu--GCAG- -5'
1583 5' -58.3 NC_001347.2 + 153202 0.7 0.690074
Target:  5'- cGCGgaagaugucGUGCAGGUCgUGCAgcgugaggcgcgggcGCGCGUCg -3'
miRNA:   3'- aCGCa--------CGCGUCCAGgGCGU---------------UGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 155982 0.72 0.587886
Target:  5'- cGCG-GCGUauccucaaguuGGGUCCCaGCGagcuGCGCGUCa -3'
miRNA:   3'- aCGCaCGCG-----------UCCAGGG-CGU----UGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 157272 0.67 0.847027
Target:  5'- uUGCG-GCGCAgacgucggcGGUCCUccagcaGCAGCugGUg -3'
miRNA:   3'- -ACGCaCGCGU---------CCAGGG------CGUUGugCAg -5'
1583 5' -58.3 NC_001347.2 + 157914 0.7 0.676411
Target:  5'- aGCG-GUGCAGacGUUuuGCGACACGUg -3'
miRNA:   3'- aCGCaCGCGUC--CAGggCGUUGUGCAg -5'
1583 5' -58.3 NC_001347.2 + 158355 0.68 0.789089
Target:  5'- cUGCGgcagucaGCgGguGGUgCgGCAGCGCGUCu -3'
miRNA:   3'- -ACGCa------CG-CguCCAgGgCGUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 162447 0.7 0.695904
Target:  5'- gGCGUGUuGCAGGgCCUGCu--GCGUCu -3'
miRNA:   3'- aCGCACG-CGUCCaGGGCGuugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 163633 0.67 0.862053
Target:  5'- cGCGgcUGCcCGGGUCgCGCAccaGCGUCu -3'
miRNA:   3'- aCGC--ACGcGUCCAGgGCGUug-UGCAG- -5'
1583 5' -58.3 NC_001347.2 + 167272 0.7 0.686179
Target:  5'- uUGC-UGUGCAGGUCCCGauACAgGUa -3'
miRNA:   3'- -ACGcACGCGUCCAGGGCguUGUgCAg -5'
1583 5' -58.3 NC_001347.2 + 170136 0.68 0.806412
Target:  5'- cGCGUGacaGC-GGUCCCGCcguGCccaGUCg -3'
miRNA:   3'- aCGCACg--CGuCCAGGGCGu--UGug-CAG- -5'
1583 5' -58.3 NC_001347.2 + 171526 0.68 0.77485
Target:  5'- aGCGUGUGCcugccgccgugcuuGaGUCCCGaUAugGCGUCg -3'
miRNA:   3'- aCGCACGCGu-------------C-CAGGGC-GUugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 173700 0.74 0.474104
Target:  5'- gGCG-GCGguGGUUCCGguACGCGg- -3'
miRNA:   3'- aCGCaCGCguCCAGGGCguUGUGCag -5'
1583 5' -58.3 NC_001347.2 + 183686 1.1 0.00237
Target:  5'- cUGCGUGCGCAGGUCCCGCAACACGUCg -3'
miRNA:   3'- -ACGCACGCGUCCAGGGCGUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 184233 0.66 0.876309
Target:  5'- aGCGUGuCGCAGcGUUcgCCGCcguuGC-CGUCg -3'
miRNA:   3'- aCGCAC-GCGUC-CAG--GGCGu---UGuGCAG- -5'
1583 5' -58.3 NC_001347.2 + 184425 0.66 0.883136
Target:  5'- aGCG-GCGcCGGGUCgCUGUGACGgagcuCGUCg -3'
miRNA:   3'- aCGCaCGC-GUCCAG-GGCGUUGU-----GCAG- -5'
1583 5' -58.3 NC_001347.2 + 185480 0.67 0.831278
Target:  5'- gGCGUuguggcGCGCAGGggcUCCGaCGugGCGUUa -3'
miRNA:   3'- aCGCA------CGCGUCCa--GGGC-GUugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 187349 0.66 0.86928
Target:  5'- gUGCGuUGCGUGG---CCGUGGCGCGUCg -3'
miRNA:   3'- -ACGC-ACGCGUCcagGGCGUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 187739 0.68 0.77485
Target:  5'- -aCGUGCGCAGGUCUugggaggagcuggagCGCAA-AUGUCu -3'
miRNA:   3'- acGCACGCGUCCAGG---------------GCGUUgUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 190780 0.67 0.831278
Target:  5'- uUGCGgcugaauCGCAGGUcguaCCCGCGcuGCGCGcUCg -3'
miRNA:   3'- -ACGCac-----GCGUCCA----GGGCGU--UGUGC-AG- -5'
1583 5' -58.3 NC_001347.2 + 194431 0.71 0.646938
Target:  5'- aGCGUGCgaGCGGGguucaCCUGCAGCGCu-- -3'
miRNA:   3'- aCGCACG--CGUCCa----GGGCGUUGUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.