miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1583 5' -58.3 NC_001347.2 + 228555 0.66 0.876309
Target:  5'- cGUGUGCGCGaaagccuGUgCCGCGGCAgCGUa -3'
miRNA:   3'- aCGCACGCGUc------CAgGGCGUUGU-GCAg -5'
1583 5' -58.3 NC_001347.2 + 221187 0.73 0.510993
Target:  5'- aGCGUGCGUguacGGUCCuCGCAggugGCACGg- -3'
miRNA:   3'- aCGCACGCGu---CCAGG-GCGU----UGUGCag -5'
1583 5' -58.3 NC_001347.2 + 208693 0.68 0.780227
Target:  5'- aGUG-GCGCAGGUCgUGC---ACGUCg -3'
miRNA:   3'- aCGCaCGCGUCCAGgGCGuugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 200205 0.67 0.820677
Target:  5'- gGUGUGCGaCGGGcCCCcggGCucgcccacugacucGGCGCGUCa -3'
miRNA:   3'- aCGCACGC-GUCCaGGG---CG--------------UUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 198385 0.71 0.627222
Target:  5'- gGUGgcGCGCGGGUCgCGCAACAgCGg- -3'
miRNA:   3'- aCGCa-CGCGUCCAGgGCGUUGU-GCag -5'
1583 5' -58.3 NC_001347.2 + 198084 0.67 0.83924
Target:  5'- cGCGgcgGuCGCGacggugacGGUCCCGCucguCGCGUUg -3'
miRNA:   3'- aCGCa--C-GCGU--------CCAGGGCGuu--GUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 197688 0.68 0.806412
Target:  5'- cGCGcUGCGCAGGgcagaCUGCGuCACGg- -3'
miRNA:   3'- aCGC-ACGCGUCCag---GGCGUuGUGCag -5'
1583 5' -58.3 NC_001347.2 + 194431 0.71 0.646938
Target:  5'- aGCGUGCgaGCGGGguucaCCUGCAGCGCu-- -3'
miRNA:   3'- aCGCACG--CGUCCa----GGGCGUUGUGcag -5'
1583 5' -58.3 NC_001347.2 + 190780 0.67 0.831278
Target:  5'- uUGCGgcugaauCGCAGGUcguaCCCGCGcuGCGCGcUCg -3'
miRNA:   3'- -ACGCac-----GCGUCCA----GGGCGU--UGUGC-AG- -5'
1583 5' -58.3 NC_001347.2 + 187739 0.68 0.77485
Target:  5'- -aCGUGCGCAGGUCUugggaggagcuggagCGCAA-AUGUCu -3'
miRNA:   3'- acGCACGCGUCCAGG---------------GCGUUgUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 187349 0.66 0.86928
Target:  5'- gUGCGuUGCGUGG---CCGUGGCGCGUCg -3'
miRNA:   3'- -ACGC-ACGCGUCcagGGCGUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 185480 0.67 0.831278
Target:  5'- gGCGUuguggcGCGCAGGggcUCCGaCGugGCGUUa -3'
miRNA:   3'- aCGCA------CGCGUCCa--GGGC-GUugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 184425 0.66 0.883136
Target:  5'- aGCG-GCGcCGGGUCgCUGUGACGgagcuCGUCg -3'
miRNA:   3'- aCGCaCGC-GUCCAG-GGCGUUGU-----GCAG- -5'
1583 5' -58.3 NC_001347.2 + 184233 0.66 0.876309
Target:  5'- aGCGUGuCGCAGcGUUcgCCGCcguuGC-CGUCg -3'
miRNA:   3'- aCGCAC-GCGUC-CAG--GGCGu---UGuGCAG- -5'
1583 5' -58.3 NC_001347.2 + 183686 1.1 0.00237
Target:  5'- cUGCGUGCGCAGGUCCCGCAACACGUCg -3'
miRNA:   3'- -ACGCACGCGUCCAGGGCGUUGUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 173700 0.74 0.474104
Target:  5'- gGCG-GCGguGGUUCCGguACGCGg- -3'
miRNA:   3'- aCGCaCGCguCCAGGGCguUGUGCag -5'
1583 5' -58.3 NC_001347.2 + 171526 0.68 0.77485
Target:  5'- aGCGUGUGCcugccgccgugcuuGaGUCCCGaUAugGCGUCg -3'
miRNA:   3'- aCGCACGCGu-------------C-CAGGGC-GUugUGCAG- -5'
1583 5' -58.3 NC_001347.2 + 170136 0.68 0.806412
Target:  5'- cGCGUGacaGC-GGUCCCGCcguGCccaGUCg -3'
miRNA:   3'- aCGCACg--CGuCCAGGGCGu--UGug-CAG- -5'
1583 5' -58.3 NC_001347.2 + 167272 0.7 0.686179
Target:  5'- uUGC-UGUGCAGGUCCCGauACAgGUa -3'
miRNA:   3'- -ACGcACGCGUCCAGGGCguUGUgCAg -5'
1583 5' -58.3 NC_001347.2 + 163633 0.67 0.862053
Target:  5'- cGCGgcUGCcCGGGUCgCGCAccaGCGUCu -3'
miRNA:   3'- aCGC--ACGcGUCCAGgGCGUug-UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.