Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1583 | 5' | -58.3 | NC_001347.2 | + | 40985 | 0.66 | 0.896166 |
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Target: 5'- cUGCuUGCGCacAGG-CCCGcCAACACcUCu -3' miRNA: 3'- -ACGcACGCG--UCCaGGGC-GUUGUGcAG- -5' |
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| 1583 | 5' | -58.3 | NC_001347.2 | + | 38277 | 0.66 | 0.86928 |
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Target: 5'- cGCGUGCGC--GUCCgCGUuaGGCACG-Ca -3' miRNA: 3'- aCGCACGCGucCAGG-GCG--UUGUGCaG- -5' |
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| 1583 | 5' | -58.3 | NC_001347.2 | + | 37935 | 0.75 | 0.404662 |
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Target: 5'- cGCGgcGCGCGGGUgCagguGCAGCGCGUCc -3' miRNA: 3'- aCGCa-CGCGUCCAgGg---CGUUGUGCAG- -5' |
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| 1583 | 5' | -58.3 | NC_001347.2 | + | 22506 | 0.66 | 0.901752 |
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Target: 5'- cGUGUGCaCGGGcUUuuGCGgagaaagGCGCGUCa -3' miRNA: 3'- aCGCACGcGUCC-AGggCGU-------UGUGCAG- -5' |
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| 1583 | 5' | -58.3 | NC_001347.2 | + | 2209 | 0.69 | 0.724752 |
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Target: 5'- aGCGaUG-GCGGGUCCgGCG--GCGUCg -3' miRNA: 3'- aCGC-ACgCGUCCAGGgCGUugUGCAG- -5' |
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| 1583 | 5' | -58.3 | NC_001347.2 | + | 1239 | 0.66 | 0.883136 |
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Target: 5'- cGCGccaUGCGCAaguGGUCgcagCGCGACGCGg- -3' miRNA: 3'- aCGC---ACGCGU---CCAGg---GCGUUGUGCag -5' |
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| 1583 | 5' | -58.3 | NC_001347.2 | + | 626 | 0.68 | 0.780227 |
|
Target: 5'- gGCuGUGCGCuccaguGGUacgcgCCUGCcGCGCGUCu -3' miRNA: 3'- aCG-CACGCGu-----CCA-----GGGCGuUGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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