Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1583 | 5' | -58.3 | NC_001347.2 | + | 197688 | 0.68 | 0.806412 |
Target: 5'- cGCGcUGCGCAGGgcagaCUGCGuCACGg- -3' miRNA: 3'- aCGC-ACGCGUCCag---GGCGUuGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 200205 | 0.67 | 0.820677 |
Target: 5'- gGUGUGCGaCGGGcCCCcggGCucgcccacugacucGGCGCGUCa -3' miRNA: 3'- aCGCACGC-GUCCaGGG---CG--------------UUGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 126393 | 0.66 | 0.876309 |
Target: 5'- -aCGUGCGCAGcUUCUGCAcGCGCGa- -3' miRNA: 3'- acGCACGCGUCcAGGGCGU-UGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 228555 | 0.66 | 0.876309 |
Target: 5'- cGUGUGCGCGaaagccuGUgCCGCGGCAgCGUa -3' miRNA: 3'- aCGCACGCGUc------CAgGGCGUUGU-GCAg -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 1239 | 0.66 | 0.883136 |
Target: 5'- cGCGccaUGCGCAaguGGUCgcagCGCGACGCGg- -3' miRNA: 3'- aCGC---ACGCGU---CCAGg---GCGUUGUGCag -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 184425 | 0.66 | 0.883136 |
Target: 5'- aGCG-GCGcCGGGUCgCUGUGACGgagcuCGUCg -3' miRNA: 3'- aCGCaCGC-GUCCAG-GGCGUUGU-----GCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 142207 | 0.66 | 0.883136 |
Target: 5'- aGCGUGCGCgAGGagaUCCC----CGCGUCc -3' miRNA: 3'- aCGCACGCG-UCC---AGGGcguuGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 87660 | 0.66 | 0.896166 |
Target: 5'- cGCGUGCGgauCAGG-CCCGaCAuccagaccgugaGCACcGUCu -3' miRNA: 3'- aCGCACGC---GUCCaGGGC-GU------------UGUG-CAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 136464 | 0.66 | 0.894901 |
Target: 5'- gGCGcaUGCGCAGGgcgacccUCCCGCGggcccuggcccgcGCAUG-Cg -3' miRNA: 3'- aCGC--ACGCGUCC-------AGGGCGU-------------UGUGCaG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 22506 | 0.66 | 0.901752 |
Target: 5'- cGUGUGCaCGGGcUUuuGCGgagaaagGCGCGUCa -3' miRNA: 3'- aCGCACGcGUCC-AGggCGU-------UGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 184233 | 0.66 | 0.876309 |
Target: 5'- aGCGUGuCGCAGcGUUcgCCGCcguuGC-CGUCg -3' miRNA: 3'- aCGCAC-GCGUC-CAG--GGCGu---UGuGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 90224 | 0.66 | 0.876309 |
Target: 5'- gGCGUG-GCGGcGUCguuuuUCGgAGCGCGUCg -3' miRNA: 3'- aCGCACgCGUC-CAG-----GGCgUUGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 190780 | 0.67 | 0.831278 |
Target: 5'- uUGCGgcugaauCGCAGGUcguaCCCGCGcuGCGCGcUCg -3' miRNA: 3'- -ACGCac-----GCGUCCA----GGGCGU--UGUGC-AG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 185480 | 0.67 | 0.831278 |
Target: 5'- gGCGUuguggcGCGCAGGggcUCCGaCGugGCGUUa -3' miRNA: 3'- aCGCA------CGCGUCCa--GGGC-GUugUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 198084 | 0.67 | 0.83924 |
Target: 5'- cGCGgcgGuCGCGacggugacGGUCCCGCucguCGCGUUg -3' miRNA: 3'- aCGCa--C-GCGU--------CCAGGGCGuu--GUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 157272 | 0.67 | 0.847027 |
Target: 5'- uUGCG-GCGCAgacgucggcGGUCCUccagcaGCAGCugGUg -3' miRNA: 3'- -ACGCaCGCGU---------CCAGGG------CGUUGugCAg -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 163633 | 0.67 | 0.862053 |
Target: 5'- cGCGgcUGCcCGGGUCgCGCAccaGCGUCu -3' miRNA: 3'- aCGC--ACGcGUCCAGgGCGUug-UGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 151721 | 0.67 | 0.862053 |
Target: 5'- cGUGUGCGUgucgAGGaCCUGguGCuuuCGUCg -3' miRNA: 3'- aCGCACGCG----UCCaGGGCguUGu--GCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 187349 | 0.66 | 0.86928 |
Target: 5'- gUGCGuUGCGUGG---CCGUGGCGCGUCg -3' miRNA: 3'- -ACGC-ACGCGUCcagGGCGUUGUGCAG- -5' |
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1583 | 5' | -58.3 | NC_001347.2 | + | 38277 | 0.66 | 0.86928 |
Target: 5'- cGCGUGCGC--GUCCgCGUuaGGCACG-Ca -3' miRNA: 3'- aCGCACGCGucCAGG-GCG--UUGUGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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