miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15833 3' -51.9 NC_004065.1 + 195258 0.66 0.997725
Target:  5'- cGCGGccGCGAUcUGgcCCGGCGgGAa -3'
miRNA:   3'- uCGCUuuUGCUGcACauGGCCGUgCU- -5'
15833 3' -51.9 NC_004065.1 + 68626 0.66 0.997725
Target:  5'- cAGCGAGcAGCuGGCGUc-GCUGGCACa- -3'
miRNA:   3'- -UCGCUU-UUG-CUGCAcaUGGCCGUGcu -5'
15833 3' -51.9 NC_004065.1 + 138560 0.66 0.997725
Target:  5'- cGGCGGAcuGACGGCGacgGUGCCGuccGCucCGGg -3'
miRNA:   3'- -UCGCUU--UUGCUGCa--CAUGGC---CGu-GCU- -5'
15833 3' -51.9 NC_004065.1 + 114866 0.66 0.997725
Target:  5'- uGGCGA---CGACG-GUgccGCCGGCcgGCGGu -3'
miRNA:   3'- -UCGCUuuuGCUGCaCA---UGGCCG--UGCU- -5'
15833 3' -51.9 NC_004065.1 + 63475 0.66 0.997725
Target:  5'- cGUGGAGA--GCGUGUGCuaCGaGCACGAc -3'
miRNA:   3'- uCGCUUUUgcUGCACAUG--GC-CGUGCU- -5'
15833 3' -51.9 NC_004065.1 + 177569 0.66 0.997725
Target:  5'- aAG-GAGGACGGUGUcUACUGGCACGc -3'
miRNA:   3'- -UCgCUUUUGCUGCAcAUGGCCGUGCu -5'
15833 3' -51.9 NC_004065.1 + 79179 0.66 0.997725
Target:  5'- cGGCacgGAGGGCG-CGUGUAUCgGGCagACGAu -3'
miRNA:   3'- -UCG---CUUUUGCuGCACAUGG-CCG--UGCU- -5'
15833 3' -51.9 NC_004065.1 + 97958 0.66 0.997687
Target:  5'- cGGUGggGaccuaccGCGAccaguuuauCGUGUACgGGUugGAg -3'
miRNA:   3'- -UCGCuuU-------UGCU---------GCACAUGgCCGugCU- -5'
15833 3' -51.9 NC_004065.1 + 78017 0.66 0.997687
Target:  5'- aGGCGGGugacaucGAUGGCGUGcGCCGGguCc- -3'
miRNA:   3'- -UCGCUU-------UUGCUGCACaUGGCCguGcu -5'
15833 3' -51.9 NC_004065.1 + 77007 0.66 0.997687
Target:  5'- aGGaGGAGGCGGCGUGcugcgACCucgacucggagcuGGCGCGGa -3'
miRNA:   3'- -UCgCUUUUGCUGCACa----UGG-------------CCGUGCU- -5'
15833 3' -51.9 NC_004065.1 + 83180 0.66 0.997315
Target:  5'- cGGCGc--GCGACGUc-GCUGaGCACGAa -3'
miRNA:   3'- -UCGCuuuUGCUGCAcaUGGC-CGUGCU- -5'
15833 3' -51.9 NC_004065.1 + 72471 0.66 0.997315
Target:  5'- gAGCGA----GACG-GUGUCGGCGCGGc -3'
miRNA:   3'- -UCGCUuuugCUGCaCAUGGCCGUGCU- -5'
15833 3' -51.9 NC_004065.1 + 162658 0.66 0.997315
Target:  5'- cGcCGAccgucACGAUGUGUacACCGGCAgCGGc -3'
miRNA:   3'- uC-GCUuu---UGCUGCACA--UGGCCGU-GCU- -5'
15833 3' -51.9 NC_004065.1 + 162467 0.66 0.997315
Target:  5'- cGGCGAAGGCcucGCGcg-GCCGGCcaggACGAg -3'
miRNA:   3'- -UCGCUUUUGc--UGCacaUGGCCG----UGCU- -5'
15833 3' -51.9 NC_004065.1 + 196527 0.66 0.997315
Target:  5'- uGGUGGAugcugaaGACGccUGCCGGCGCGu -3'
miRNA:   3'- -UCGCUUuug----CUGCacAUGGCCGUGCu -5'
15833 3' -51.9 NC_004065.1 + 98396 0.66 0.997315
Target:  5'- uGGCGAGGAgGGCGaUGagagugGCggCGGCAUGAg -3'
miRNA:   3'- -UCGCUUUUgCUGC-ACa-----UG--GCCGUGCU- -5'
15833 3' -51.9 NC_004065.1 + 35406 0.66 0.997315
Target:  5'- cGGCGc---CGugGgagaGUACCGGgACGAc -3'
miRNA:   3'- -UCGCuuuuGCugCa---CAUGGCCgUGCU- -5'
15833 3' -51.9 NC_004065.1 + 136946 0.66 0.997271
Target:  5'- cGGCGcu-ACGACGgcagGaaaggacUGCCGGcCACGAu -3'
miRNA:   3'- -UCGCuuuUGCUGCa---C-------AUGGCC-GUGCU- -5'
15833 3' -51.9 NC_004065.1 + 77833 0.66 0.997271
Target:  5'- uGCGGAAccaggcuccggacGCGGCGUGggcuccCCGGUGCa- -3'
miRNA:   3'- uCGCUUU-------------UGCUGCACau----GGCCGUGcu -5'
15833 3' -51.9 NC_004065.1 + 85544 0.66 0.997271
Target:  5'- cGUGAAGACGGCGcacgucgUGU-UCGGCGCc- -3'
miRNA:   3'- uCGCUUUUGCUGC-------ACAuGGCCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.