miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15833 5' -56.5 NC_004065.1 + 80135 0.66 0.958378
Target:  5'- aGGUCGUCCcuggCGCggcagaGGCGGCUgacgaCGg -3'
miRNA:   3'- -CCAGCAGGa---GCGa-----UCGCCGGacaa-GC- -5'
15833 5' -56.5 NC_004065.1 + 166165 0.66 0.954738
Target:  5'- uGGUgGUCCuUCGCgaacGCGGCCauggCGa -3'
miRNA:   3'- -CCAgCAGG-AGCGau--CGCCGGacaaGC- -5'
15833 5' -56.5 NC_004065.1 + 208932 0.66 0.954738
Target:  5'- --aCGUCuCUcCGUcgUGGCGGCCgaacUGUUCGg -3'
miRNA:   3'- ccaGCAG-GA-GCG--AUCGCCGG----ACAAGC- -5'
15833 5' -56.5 NC_004065.1 + 122507 0.66 0.950888
Target:  5'- cGGUCGccgcgcgcaccUCCUCGUgcgAGCGGUCgag-CGa -3'
miRNA:   3'- -CCAGC-----------AGGAGCGa--UCGCCGGacaaGC- -5'
15833 5' -56.5 NC_004065.1 + 66567 0.66 0.946825
Target:  5'- aGUCGUUCucgUCGCUGGCGagcGCCUGccgCa -3'
miRNA:   3'- cCAGCAGG---AGCGAUCGC---CGGACaa-Gc -5'
15833 5' -56.5 NC_004065.1 + 32811 0.66 0.942547
Target:  5'- cGUCGUCCUCG-UAGCcgucgGGCCgc-UCGu -3'
miRNA:   3'- cCAGCAGGAGCgAUCG-----CCGGacaAGC- -5'
15833 5' -56.5 NC_004065.1 + 114983 0.66 0.942547
Target:  5'- cGUUGcCCUCGgccCUGGCGGCCgcg-CGg -3'
miRNA:   3'- cCAGCaGGAGC---GAUCGCCGGacaaGC- -5'
15833 5' -56.5 NC_004065.1 + 62109 0.67 0.938051
Target:  5'- cGGUCGUUacgCUCGCgggaGGCGGCaucgUCGc -3'
miRNA:   3'- -CCAGCAG---GAGCGa---UCGCCGgacaAGC- -5'
15833 5' -56.5 NC_004065.1 + 35005 0.67 0.923244
Target:  5'- cGUCGcCCgUCGUUGGCGGCgCg--UCGa -3'
miRNA:   3'- cCAGCaGG-AGCGAUCGCCG-GacaAGC- -5'
15833 5' -56.5 NC_004065.1 + 141354 0.68 0.900424
Target:  5'- cGUCGUCCgcucgcgggUGCUGGCGGCgCUcgacUCGa -3'
miRNA:   3'- cCAGCAGGa--------GCGAUCGCCG-GAca--AGC- -5'
15833 5' -56.5 NC_004065.1 + 108794 0.68 0.894178
Target:  5'- cGUCGaaCCUgGCgUGGCGGCC-GUUCa -3'
miRNA:   3'- cCAGCa-GGAgCG-AUCGCCGGaCAAGc -5'
15833 5' -56.5 NC_004065.1 + 180504 0.68 0.88772
Target:  5'- uGGUCGgcauguucuUCUUCGUguucGGCGGCCUGg--- -3'
miRNA:   3'- -CCAGC---------AGGAGCGa---UCGCCGGACaagc -5'
15833 5' -56.5 NC_004065.1 + 8700 0.68 0.881055
Target:  5'- uGGUCG-CCaguagCGCguuagGGgGGCCUGUuaUCGa -3'
miRNA:   3'- -CCAGCaGGa----GCGa----UCgCCGGACA--AGC- -5'
15833 5' -56.5 NC_004065.1 + 105830 0.69 0.836939
Target:  5'- cGcCGUUCUCGUgcuacucGGCGGCCUGcgCGc -3'
miRNA:   3'- cCaGCAGGAGCGa------UCGCCGGACaaGC- -5'
15833 5' -56.5 NC_004065.1 + 17679 0.7 0.80402
Target:  5'- cGGUCGUCCgUCGCgccaucgccGUGGCCg--UCGu -3'
miRNA:   3'- -CCAGCAGG-AGCGau-------CGCCGGacaAGC- -5'
15833 5' -56.5 NC_004065.1 + 27170 0.72 0.731796
Target:  5'- cGGUCGUCCU-GUUGGC--CCUGUUCa -3'
miRNA:   3'- -CCAGCAGGAgCGAUCGccGGACAAGc -5'
15833 5' -56.5 NC_004065.1 + 95405 1.12 0.003128
Target:  5'- cGGUCGUCCUCGCUAGCGGCCUGUUCGa -3'
miRNA:   3'- -CCAGCAGGAGCGAUCGCCGGACAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.