miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15834 3' -52.6 NC_004065.1 + 186376 0.66 0.991713
Target:  5'- -cGGUGAUGCGaCGGCggaGGCUGCguUGGu -3'
miRNA:   3'- uaCUACUACGUcGUCGg--CUGAUG--ACC- -5'
15834 3' -52.6 NC_004065.1 + 89834 0.66 0.990535
Target:  5'- cUGGUGGUGCuGCuacuGCCG-CUguuguuguuACUGGu -3'
miRNA:   3'- uACUACUACGuCGu---CGGCuGA---------UGACC- -5'
15834 3' -52.6 NC_004065.1 + 79409 0.66 0.990535
Target:  5'- -cGAUcGUGgaCAGCauAGCCGcGCUGCUGGa -3'
miRNA:   3'- uaCUAcUAC--GUCG--UCGGC-UGAUGACC- -5'
15834 3' -52.6 NC_004065.1 + 115588 0.66 0.990535
Target:  5'- gGUGGUGGUgGCGGCGGgaGAUgaUACUGa -3'
miRNA:   3'- -UACUACUA-CGUCGUCggCUG--AUGACc -5'
15834 3' -52.6 NC_004065.1 + 181543 0.66 0.990535
Target:  5'- -aGAUGAUGCucuaucGCGGC-GACUAC-GGc -3'
miRNA:   3'- uaCUACUACGu-----CGUCGgCUGAUGaCC- -5'
15834 3' -52.6 NC_004065.1 + 65318 0.66 0.990535
Target:  5'- cGUGGUGGgaccgGCGGCGGCgGcggcagcaGCUGCgGGu -3'
miRNA:   3'- -UACUACUa----CGUCGUCGgC--------UGAUGaCC- -5'
15834 3' -52.6 NC_004065.1 + 144382 0.66 0.990535
Target:  5'- ----cGAUGUGGUAGCCGaACUGCa-- -3'
miRNA:   3'- uacuaCUACGUCGUCGGC-UGAUGacc -5'
15834 3' -52.6 NC_004065.1 + 69425 0.66 0.98923
Target:  5'- ----aGGUGC-GC-GCCGAcCUGCUGGa -3'
miRNA:   3'- uacuaCUACGuCGuCGGCU-GAUGACC- -5'
15834 3' -52.6 NC_004065.1 + 69117 0.66 0.98923
Target:  5'- -cGAgcagGAcgcGCGGCGcGCCGACaaggUGCUGGg -3'
miRNA:   3'- uaCUa---CUa--CGUCGU-CGGCUG----AUGACC- -5'
15834 3' -52.6 NC_004065.1 + 130853 0.66 0.98779
Target:  5'- -cGAggaGGUGCAGCAGCa-GCUGgaGGc -3'
miRNA:   3'- uaCUa--CUACGUCGUCGgcUGAUgaCC- -5'
15834 3' -52.6 NC_004065.1 + 160990 0.66 0.98779
Target:  5'- -------gGCGGCGGCgGGCUGCUGc -3'
miRNA:   3'- uacuacuaCGUCGUCGgCUGAUGACc -5'
15834 3' -52.6 NC_004065.1 + 105096 0.66 0.986204
Target:  5'- -cGAaccUGGUGCgcguGGUGGCCGACgacgugccGCUGGa -3'
miRNA:   3'- uaCU---ACUACG----UCGUCGGCUGa-------UGACC- -5'
15834 3' -52.6 NC_004065.1 + 39625 0.66 0.985699
Target:  5'- aGUGAgGAUGCAGCcagauacagcugcgAGCCugaaGGCUACgGGu -3'
miRNA:   3'- -UACUaCUACGUCG--------------UCGG----CUGAUGaCC- -5'
15834 3' -52.6 NC_004065.1 + 63380 0.67 0.984465
Target:  5'- cUGAcgcUGAUGCGGacCAGCCGcGCcagcgACUGGa -3'
miRNA:   3'- uACU---ACUACGUC--GUCGGC-UGa----UGACC- -5'
15834 3' -52.6 NC_004065.1 + 199475 0.67 0.978245
Target:  5'- -gGAcGAUGCGGCAGCCGAa------ -3'
miRNA:   3'- uaCUaCUACGUCGUCGGCUgaugacc -5'
15834 3' -52.6 NC_004065.1 + 68229 0.67 0.978245
Target:  5'- -gGGUGAgcgcgucgGCGGUgacgaggacGGaCCGGCUGCUGGc -3'
miRNA:   3'- uaCUACUa-------CGUCG---------UC-GGCUGAUGACC- -5'
15834 3' -52.6 NC_004065.1 + 108945 0.67 0.978245
Target:  5'- ---cUGcgGCAGUAcGCCGACgacCUGGg -3'
miRNA:   3'- uacuACuaCGUCGU-CGGCUGau-GACC- -5'
15834 3' -52.6 NC_004065.1 + 77656 0.67 0.975811
Target:  5'- -aGGUGAUGCGGCAGgUGA--GCaGGg -3'
miRNA:   3'- uaCUACUACGUCGUCgGCUgaUGaCC- -5'
15834 3' -52.6 NC_004065.1 + 83292 0.68 0.973183
Target:  5'- -------cGCGGCGGCCGACcGCUGc -3'
miRNA:   3'- uacuacuaCGUCGUCGGCUGaUGACc -5'
15834 3' -52.6 NC_004065.1 + 101532 0.68 0.970354
Target:  5'- -cGGUGGaggcgGCAGCAGCagCGGC-GCUGGc -3'
miRNA:   3'- uaCUACUa----CGUCGUCG--GCUGaUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.