miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15834 5' -63.6 NC_004065.1 + 198555 0.66 0.723457
Target:  5'- aGGUCCGCg-CGCGGCacgGaCCGC-UGCa -3'
miRNA:   3'- -CCGGGCGagGCGCCGa--C-GGCGcAUGc -5'
15834 5' -63.6 NC_004065.1 + 123863 0.66 0.723457
Target:  5'- aGCCCaugucGCUCCGCacGC-GCCGCagGUGCGc -3'
miRNA:   3'- cCGGG-----CGAGGCGc-CGaCGGCG--CAUGC- -5'
15834 5' -63.6 NC_004065.1 + 61459 0.66 0.723457
Target:  5'- -aCCCGCUCCGUGauGC-GCUGCGccaugGCGu -3'
miRNA:   3'- ccGGGCGAGGCGC--CGaCGGCGCa----UGC- -5'
15834 5' -63.6 NC_004065.1 + 186360 0.66 0.715252
Target:  5'- cGGCauuguCGUUUCGCGGUgaugcgacggcggagGCUGCGUugGu -3'
miRNA:   3'- -CCGg----GCGAGGCGCCGa--------------CGGCGCAugC- -5'
15834 5' -63.6 NC_004065.1 + 152294 0.66 0.714338
Target:  5'- cGCCCaGUcCUGCGGCgGCgGCGgugccgGCGg -3'
miRNA:   3'- cCGGG-CGaGGCGCCGaCGgCGCa-----UGC- -5'
15834 5' -63.6 NC_004065.1 + 91707 0.66 0.714338
Target:  5'- cGGCCaCGaugUCCGCGaGCUcCCGCGUc-- -3'
miRNA:   3'- -CCGG-GCg--AGGCGC-CGAcGGCGCAugc -5'
15834 5' -63.6 NC_004065.1 + 83199 0.66 0.714338
Target:  5'- cGGCCCGCUCUcgagucccccguGCGcGCcGCCGgGa--- -3'
miRNA:   3'- -CCGGGCGAGG------------CGC-CGaCGGCgCaugc -5'
15834 5' -63.6 NC_004065.1 + 57949 0.66 0.714338
Target:  5'- -cCCCGCUcgaaCCGCGGCggccacggagGaCCGCG-ACGa -3'
miRNA:   3'- ccGGGCGA----GGCGCCGa---------C-GGCGCaUGC- -5'
15834 5' -63.6 NC_004065.1 + 193556 0.66 0.714338
Target:  5'- aGGCUCGCUUCGauaaGGagGUCGCGgACGa -3'
miRNA:   3'- -CCGGGCGAGGCg---CCgaCGGCGCaUGC- -5'
15834 5' -63.6 NC_004065.1 + 211569 0.66 0.713423
Target:  5'- uGGCCCGUcgaggaaUCCgGCGGCUGUC-CGa--- -3'
miRNA:   3'- -CCGGGCG-------AGG-CGCCGACGGcGCaugc -5'
15834 5' -63.6 NC_004065.1 + 20069 0.66 0.70516
Target:  5'- cGGCUCug-CCGCGGCacUGCCGUcugACGg -3'
miRNA:   3'- -CCGGGcgaGGCGCCG--ACGGCGca-UGC- -5'
15834 5' -63.6 NC_004065.1 + 109396 0.66 0.705159
Target:  5'- aGCCCGUcggCCGCGGCggacGCCaCGaGCu -3'
miRNA:   3'- cCGGGCGa--GGCGCCGa---CGGcGCaUGc -5'
15834 5' -63.6 NC_004065.1 + 203077 0.66 0.695929
Target:  5'- aGCCCGC--CGCGGCcGCCG-GaGCGg -3'
miRNA:   3'- cCGGGCGagGCGCCGaCGGCgCaUGC- -5'
15834 5' -63.6 NC_004065.1 + 103437 0.66 0.695929
Target:  5'- cGGCCUGaucgacaccuucCUgCGCGuGCUGCUGCGccACGc -3'
miRNA:   3'- -CCGGGC------------GAgGCGC-CGACGGCGCa-UGC- -5'
15834 5' -63.6 NC_004065.1 + 179681 0.66 0.695929
Target:  5'- gGGCUCGggaUCGCGGCggugGCCacGCGUGCc -3'
miRNA:   3'- -CCGGGCga-GGCGCCGa---CGG--CGCAUGc -5'
15834 5' -63.6 NC_004065.1 + 62478 0.66 0.695929
Target:  5'- cGGCaggaGCggCCGCGGCgGuaGCGUugGu -3'
miRNA:   3'- -CCGgg--CGa-GGCGCCGaCggCGCAugC- -5'
15834 5' -63.6 NC_004065.1 + 115694 0.66 0.695929
Target:  5'- nGGCguuCUGUUUCGCGGCgGCCGCcaggAUGg -3'
miRNA:   3'- -CCG---GGCGAGGCGCCGaCGGCGca--UGC- -5'
15834 5' -63.6 NC_004065.1 + 112033 0.66 0.695929
Target:  5'- aGCCCGaaCCGCGGCcgaaucgGCCGaCGgaguuCGg -3'
miRNA:   3'- cCGGGCgaGGCGCCGa------CGGC-GCau---GC- -5'
15834 5' -63.6 NC_004065.1 + 170084 0.66 0.686653
Target:  5'- gGGCaCCaCUCCG-GGCUucugGCCGCGccGCGa -3'
miRNA:   3'- -CCG-GGcGAGGCgCCGA----CGGCGCa-UGC- -5'
15834 5' -63.6 NC_004065.1 + 163422 0.66 0.686653
Target:  5'- cGUCgGCaacgCCGCGGUggccGCCGcCGUGCa -3'
miRNA:   3'- cCGGgCGa---GGCGCCGa---CGGC-GCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.