miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15835 3' -54.5 NC_004065.1 + 33784 0.66 0.98815
Target:  5'- uCGAGAUCGAacAGGAuCuuGGcgaucCCGUCGc -3'
miRNA:   3'- -GCUCUAGCU--UCUUuGggCCc----GGCAGC- -5'
15835 3' -54.5 NC_004065.1 + 88898 0.66 0.98815
Target:  5'- aCGcAGGUUGAGG-AACCUGaGCgCGUCGg -3'
miRNA:   3'- -GC-UCUAGCUUCuUUGGGCcCG-GCAGC- -5'
15835 3' -54.5 NC_004065.1 + 212787 0.66 0.98815
Target:  5'- aCGAGAUCGAGGcAGCUgaGGCCcuuUCGg -3'
miRNA:   3'- -GCUCUAGCUUCuUUGGgcCCGGc--AGC- -5'
15835 3' -54.5 NC_004065.1 + 132538 0.66 0.98815
Target:  5'- cCGcAGAUCGcugcGgcACuCCGGGCCGUUc -3'
miRNA:   3'- -GC-UCUAGCuu--CuuUG-GGCCCGGCAGc -5'
15835 3' -54.5 NC_004065.1 + 196257 0.66 0.98815
Target:  5'- uCGAucUCGAauGGAGGCCCGaGGCC-UCc -3'
miRNA:   3'- -GCUcuAGCU--UCUUUGGGC-CCGGcAGc -5'
15835 3' -54.5 NC_004065.1 + 71848 0.66 0.98815
Target:  5'- gGAGAgCGGAGGGAUCCGgaaagcgcGGCCGa-- -3'
miRNA:   3'- gCUCUaGCUUCUUUGGGC--------CCGGCagc -5'
15835 3' -54.5 NC_004065.1 + 82878 0.66 0.98772
Target:  5'- aGGGGUUGAAGAAAgucuCCaCGcaaguguccaugucGGCCGUCa -3'
miRNA:   3'- gCUCUAGCUUCUUU----GG-GC--------------CCGGCAGc -5'
15835 3' -54.5 NC_004065.1 + 77686 0.66 0.986669
Target:  5'- gGAGAUCGAGccGAGCgUGGGCCccguguuccuGUCGc -3'
miRNA:   3'- gCUCUAGCUUc-UUUGgGCCCGG----------CAGC- -5'
15835 3' -54.5 NC_004065.1 + 223268 0.66 0.986669
Target:  5'- gCGAGGaccaCGAGGAccGACCCGaGuGCCGcCGc -3'
miRNA:   3'- -GCUCUa---GCUUCU--UUGGGC-C-CGGCaGC- -5'
15835 3' -54.5 NC_004065.1 + 112019 0.66 0.986669
Target:  5'- gGAGGagGAcgAGGAGCCCGaaccgcGGCCGaaUCGg -3'
miRNA:   3'- gCUCUagCU--UCUUUGGGC------CCGGC--AGC- -5'
15835 3' -54.5 NC_004065.1 + 166364 0.66 0.986669
Target:  5'- gCGAGGUCGAgcAGAagAACCUGGGg-GUCc -3'
miRNA:   3'- -GCUCUAGCU--UCU--UUGGGCCCggCAGc -5'
15835 3' -54.5 NC_004065.1 + 186630 0.66 0.985049
Target:  5'- uGAcGAUCGAacGGguGgUCGGGCCGcCGa -3'
miRNA:   3'- gCU-CUAGCU--UCuuUgGGCCCGGCaGC- -5'
15835 3' -54.5 NC_004065.1 + 164625 0.66 0.985049
Target:  5'- aGAGGcucgcagccUCGGAGGAACaguCGGGUCG-CGg -3'
miRNA:   3'- gCUCU---------AGCUUCUUUGg--GCCCGGCaGC- -5'
15835 3' -54.5 NC_004065.1 + 74565 0.66 0.985049
Target:  5'- gGAGAgcUUGGAGAGggGCCagggacaguUGGuGCCGUCGg -3'
miRNA:   3'- gCUCU--AGCUUCUU--UGG---------GCC-CGGCAGC- -5'
15835 3' -54.5 NC_004065.1 + 23078 0.66 0.983284
Target:  5'- -aGGAUCGGAGAGACgCGGaCCGa-- -3'
miRNA:   3'- gcUCUAGCUUCUUUGgGCCcGGCagc -5'
15835 3' -54.5 NC_004065.1 + 66758 0.66 0.981365
Target:  5'- -cGGAaucgCGAGGAGGCgCCGGcGCCGcCGc -3'
miRNA:   3'- gcUCUa---GCUUCUUUG-GGCC-CGGCaGC- -5'
15835 3' -54.5 NC_004065.1 + 48319 0.66 0.981365
Target:  5'- aGGGAUCGAugaugaGGAugAGCCgGGGUCGg-- -3'
miRNA:   3'- gCUCUAGCU------UCU--UUGGgCCCGGCagc -5'
15835 3' -54.5 NC_004065.1 + 18581 0.66 0.979286
Target:  5'- cCGAGGagCGGAGggGCCUcguuGGuGuuGUCGu -3'
miRNA:   3'- -GCUCUa-GCUUCuuUGGG----CC-CggCAGC- -5'
15835 3' -54.5 NC_004065.1 + 197540 0.66 0.979286
Target:  5'- cCGAGAUCGucAAGGGACaCUGGcgcGCCGaCGa -3'
miRNA:   3'- -GCUCUAGC--UUCUUUG-GGCC---CGGCaGC- -5'
15835 3' -54.5 NC_004065.1 + 74507 0.67 0.977039
Target:  5'- gGAGGUCGAuGAGGCUggagaUGaGGCCGUUu -3'
miRNA:   3'- gCUCUAGCUuCUUUGG-----GC-CCGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.