miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15835 5' -59.6 NC_004065.1 + 32495 0.66 0.864402
Target:  5'- -aCGAUcGUCCCCUucuaccgcgcGcGGCcgGGUCCCUCg -3'
miRNA:   3'- ggGUUGuCAGGGGA----------C-CCG--UCAGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 182956 0.66 0.864402
Target:  5'- aCUAGCAG-CUCCUGGGUcauGGUCUuCUUg -3'
miRNA:   3'- gGGUUGUCaGGGGACCCG---UCAGG-GAG- -5'
15835 5' -59.6 NC_004065.1 + 117173 0.66 0.864402
Target:  5'- gCCGACGGgguccgCCCCUgGGGCAGgcguugCgCCa- -3'
miRNA:   3'- gGGUUGUCa-----GGGGA-CCCGUCa-----G-GGag -5'
15835 5' -59.6 NC_004065.1 + 121309 0.66 0.849698
Target:  5'- aCCgGGCAGcggCCCCgcacucgGGGCucgucuAGUCuCCUCu -3'
miRNA:   3'- -GGgUUGUCa--GGGGa------CCCG------UCAG-GGAG- -5'
15835 5' -59.6 NC_004065.1 + 198489 0.66 0.826321
Target:  5'- aCCAGCAGcUCCaugCCgGGGUAGcCCCg- -3'
miRNA:   3'- gGGUUGUC-AGG---GGaCCCGUCaGGGag -5'
15835 5' -59.6 NC_004065.1 + 158028 0.66 0.826321
Target:  5'- gUCCAGCAGgcucacCUCCaGGGCAugcGUCgCCUCc -3'
miRNA:   3'- -GGGUUGUCa-----GGGGaCCCGU---CAG-GGAG- -5'
15835 5' -59.6 NC_004065.1 + 198563 0.67 0.801509
Target:  5'- gCC-GCGGUCuCCCUGGcuaccGCcGUCCUUCa -3'
miRNA:   3'- gGGuUGUCAG-GGGACC-----CGuCAGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 136215 0.67 0.792088
Target:  5'- aCCAGcCAGUCgCCgGGGCuggggaaGGUCuCCUCc -3'
miRNA:   3'- gGGUU-GUCAGgGGaCCCG-------UCAG-GGAG- -5'
15835 5' -59.6 NC_004065.1 + 186339 0.67 0.77899
Target:  5'- cCCCAugugcaACGGUCCCCucgagguucucggcgUGauccucggacccGGaCAGUCCCUCu -3'
miRNA:   3'- -GGGU------UGUCAGGGG---------------AC------------CC-GUCAGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 182497 0.68 0.748351
Target:  5'- uCCCAAUugggcgguGGUCCCaauagGGGCgguGGUCCCa- -3'
miRNA:   3'- -GGGUUG--------UCAGGGga---CCCG---UCAGGGag -5'
15835 5' -59.6 NC_004065.1 + 38211 0.68 0.748351
Target:  5'- aCUGAUAG-CCCCggggGGGUGGgaUCCCUCc -3'
miRNA:   3'- gGGUUGUCaGGGGa---CCCGUC--AGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 425 0.68 0.748351
Target:  5'- gCCCGGgGGgugaacCCCCUGGaGCcG-CCCUCg -3'
miRNA:   3'- -GGGUUgUCa-----GGGGACC-CGuCaGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 116252 0.69 0.700491
Target:  5'- gCCCGAguCGGUCgUCUGccgccgcGGCuGUCCCUCg -3'
miRNA:   3'- -GGGUU--GUCAGgGGAC-------CCGuCAGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 50494 0.69 0.691876
Target:  5'- aCCGcaGGUCCCCacaguUGGGCGucCCCUCg -3'
miRNA:   3'- gGGUugUCAGGGG-----ACCCGUcaGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 125706 0.7 0.643498
Target:  5'- aCCCGAUcaUCCCCcugGGGCGGgCCCg- -3'
miRNA:   3'- -GGGUUGucAGGGGa--CCCGUCaGGGag -5'
15835 5' -59.6 NC_004065.1 + 160663 0.7 0.63377
Target:  5'- cCUCGACAucauGUCgCCgaGGGCAGguugCCCUCc -3'
miRNA:   3'- -GGGUUGU----CAG-GGgaCCCGUCa---GGGAG- -5'
15835 5' -59.6 NC_004065.1 + 25312 0.7 0.63377
Target:  5'- gCCCAcgaacACAGcgaUCCCagggucCUGcGGCAGUCCCUUu -3'
miRNA:   3'- -GGGU-----UGUC---AGGG------GAC-CCGUCAGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 148428 0.7 0.63377
Target:  5'- gCCAGCauGGUCgCCUGGGCgcguugGGUCuCCUUg -3'
miRNA:   3'- gGGUUG--UCAGgGGACCCG------UCAG-GGAG- -5'
15835 5' -59.6 NC_004065.1 + 9008 0.71 0.575604
Target:  5'- aCCCG--GGUacCCCCUugcaacugcGGGCGGUCCUUCg -3'
miRNA:   3'- -GGGUugUCA--GGGGA---------CCCGUCAGGGAG- -5'
15835 5' -59.6 NC_004065.1 + 22030 0.71 0.556442
Target:  5'- aCCCGgccACGG-CCCC-GGGCAGgccgcgguaUCCCUCc -3'
miRNA:   3'- -GGGU---UGUCaGGGGaCCCGUC---------AGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.