miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15838 5' -54.7 NC_004065.1 + 33623 0.66 0.978601
Target:  5'- cGGCaUGGCCAaggccaUCGCGUUCgGGg- -3'
miRNA:   3'- -CCGcACUGGUgug---AGCGCAAGaCCau -5'
15838 5' -54.7 NC_004065.1 + 113928 0.66 0.976265
Target:  5'- cGCGUGucgacgacGCgGCGCUCGgGggCUGGg- -3'
miRNA:   3'- cCGCAC--------UGgUGUGAGCgCaaGACCau -5'
15838 5' -54.7 NC_004065.1 + 90691 0.67 0.96504
Target:  5'- cGGCGcugGGCacgaACACgaucCGCG-UCUGGUAg -3'
miRNA:   3'- -CCGCa--CUGg---UGUGa---GCGCaAGACCAU- -5'
15838 5' -54.7 NC_004065.1 + 165885 0.67 0.961733
Target:  5'- aGGCGaGGCCGCACgCGCugccgUCgUGGUAc -3'
miRNA:   3'- -CCGCaCUGGUGUGaGCGca---AG-ACCAU- -5'
15838 5' -54.7 NC_004065.1 + 60077 0.68 0.946355
Target:  5'- cGCG-GGCCGCGCUCGuCGUcgucgaagaggUCggGGUAg -3'
miRNA:   3'- cCGCaCUGGUGUGAGC-GCA-----------AGa-CCAU- -5'
15838 5' -54.7 NC_004065.1 + 33929 0.69 0.916514
Target:  5'- uGGCGUGGCga-GCcgCGCGUUCUucaGGUAg -3'
miRNA:   3'- -CCGCACUGgugUGa-GCGCAAGA---CCAU- -5'
15838 5' -54.7 NC_004065.1 + 31597 0.69 0.916514
Target:  5'- cGGUG-GGCUACACUCGC-UUCgUGGa- -3'
miRNA:   3'- -CCGCaCUGGUGUGAGCGcAAG-ACCau -5'
15838 5' -54.7 NC_004065.1 + 221997 0.7 0.878478
Target:  5'- gGGCG-GACCGUGgUCGUGggUCUGGUAg -3'
miRNA:   3'- -CCGCaCUGGUGUgAGCGCa-AGACCAU- -5'
15838 5' -54.7 NC_004065.1 + 99389 0.7 0.856555
Target:  5'- gGGCGUGggcuGCCugGCggcgggCGCGUUgCUGGa- -3'
miRNA:   3'- -CCGCAC----UGGugUGa-----GCGCAA-GACCau -5'
15838 5' -54.7 NC_004065.1 + 167798 0.72 0.79887
Target:  5'- cGGCGUGACCGCuuUC-CGU-CUGGa- -3'
miRNA:   3'- -CCGCACUGGUGugAGcGCAaGACCau -5'
15838 5' -54.7 NC_004065.1 + 31900 0.72 0.770893
Target:  5'- cGGCGaUGACCA-GCUCGCagaccucGUUCUGGg- -3'
miRNA:   3'- -CCGC-ACUGGUgUGAGCG-------CAAGACCau -5'
15838 5' -54.7 NC_004065.1 + 20281 0.73 0.713717
Target:  5'- uGGCGUGAUacguGCGCUCGUGUgguggacUUUGGUGa -3'
miRNA:   3'- -CCGCACUGg---UGUGAGCGCA-------AGACCAU- -5'
15838 5' -54.7 NC_004065.1 + 227306 0.73 0.704887
Target:  5'- -cCGUGauguuuccuGCCACGCUCGCGUUCUGa-- -3'
miRNA:   3'- ccGCAC---------UGGUGUGAGCGCAAGACcau -5'
15838 5' -54.7 NC_004065.1 + 195578 0.75 0.62499
Target:  5'- uGCGUGcCCACGCUCGgGUgacggCUGGg- -3'
miRNA:   3'- cCGCACuGGUGUGAGCgCAa----GACCau -5'
15838 5' -54.7 NC_004065.1 + 93503 1.09 0.005909
Target:  5'- gGGCGUGACCACACUCGCGUUCUGGUAg -3'
miRNA:   3'- -CCGCACUGGUGUGAGCGCAAGACCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.