miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 194114 0.66 0.847829
Target:  5'- -uCGCaGAcCCGCGGguaucgguacggccuCGUCUGUCCCGa -3'
miRNA:   3'- cuGCGaCU-GGCGCC---------------GUAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 133173 0.66 0.844824
Target:  5'- cGGCGC---CCGCGGCGacagcgcgCCGUCUCGa -3'
miRNA:   3'- -CUGCGacuGGCGCCGUa-------GGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 122268 0.66 0.844824
Target:  5'- cGCGCcgacaccGACCuGgGGCAUCCG-CCgGCc -3'
miRNA:   3'- cUGCGa------CUGG-CgCCGUAGGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 28736 0.66 0.844824
Target:  5'- --aGgaGACCGCGGUGgcggacgCCuUCCUGCg -3'
miRNA:   3'- cugCgaCUGGCGCCGUa------GGcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 66383 0.66 0.844824
Target:  5'- -cCGCUG-CCGCuGCcgCCGcCgCCGCc -3'
miRNA:   3'- cuGCGACuGGCGcCGuaGGCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 148488 0.66 0.844824
Target:  5'- uGGCGCgUGAuCCuCGG-GUCCGUCUCGUc -3'
miRNA:   3'- -CUGCG-ACU-GGcGCCgUAGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 199447 0.66 0.837192
Target:  5'- aGGCGCUcGCCGCGGCGgaaCGggggCUgGUa -3'
miRNA:   3'- -CUGCGAcUGGCGCCGUag-GCa---GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 30461 0.66 0.837192
Target:  5'- cGGCGUcugGACCGCGGCAcgauggggCgCG-CCCGg -3'
miRNA:   3'- -CUGCGa--CUGGCGCCGUa-------G-GCaGGGCg -5'
15839 3' -60.5 NC_004065.1 + 88027 0.66 0.837192
Target:  5'- cGACGauccGCCGCGGUAUCguCGUCaUCGCc -3'
miRNA:   3'- -CUGCgac-UGGCGCCGUAG--GCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 104152 0.66 0.837192
Target:  5'- -uCGCcuuCCGCGGCgguGUCgGUCgCCGCu -3'
miRNA:   3'- cuGCGacuGGCGCCG---UAGgCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 172210 0.66 0.837192
Target:  5'- gGACGCUGAucucgucguccCCGuCGG-GUCC-UCCCGUc -3'
miRNA:   3'- -CUGCGACU-----------GGC-GCCgUAGGcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 96964 0.66 0.837192
Target:  5'- -cUGCUG-CCGCgccugcugcgccGGcCGUCCGUCgCGCu -3'
miRNA:   3'- cuGCGACuGGCG------------CC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 45539 0.66 0.837192
Target:  5'- cGGCGCcgcGGCgGCGGCGgcagCCG-CCCa- -3'
miRNA:   3'- -CUGCGa--CUGgCGCCGUa---GGCaGGGcg -5'
15839 3' -60.5 NC_004065.1 + 65897 0.66 0.837192
Target:  5'- -cUGCUGauGCCGCGGCGcCUGgaacuguaCCGCa -3'
miRNA:   3'- cuGCGAC--UGGCGCCGUaGGCag------GGCG- -5'
15839 3' -60.5 NC_004065.1 + 47289 0.66 0.837192
Target:  5'- cGACGUgucggUGGCCcCGGCGUCg--CCCGUg -3'
miRNA:   3'- -CUGCG-----ACUGGcGCCGUAGgcaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 25007 0.66 0.837192
Target:  5'- gGGCGUccgUGGgCGCGGCAaggggCCGugUCCCGa -3'
miRNA:   3'- -CUGCG---ACUgGCGCCGUa----GGC--AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 196404 0.66 0.837192
Target:  5'- aACGCgaUGGCCuuGGCcaugCCGgCCCGCa -3'
miRNA:   3'- cUGCG--ACUGGcgCCGua--GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 27701 0.66 0.829396
Target:  5'- uGCGUaggGAUCG-GGCGUCUGgCCCGUg -3'
miRNA:   3'- cUGCGa--CUGGCgCCGUAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 91195 0.66 0.829396
Target:  5'- aGCGCcgucggcGugCGCGGCAUCgG-CgCCGCc -3'
miRNA:   3'- cUGCGa------CugGCGCCGUAGgCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 132343 0.66 0.829396
Target:  5'- cGGCaGC-GACCGCGaGUAUCaCaUCCUGCg -3'
miRNA:   3'- -CUG-CGaCUGGCGC-CGUAG-GcAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.