miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 163491 0.66 0.808403
Target:  5'- cGGCGCcggUGGCgGCGGCuUCaauucuucggaagaaCGUCgCCGCg -3'
miRNA:   3'- -CUGCG---ACUGgCGCCGuAG---------------GCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 66129 0.66 0.821442
Target:  5'- aGGCGCUGGCgCGCugGGCcgCgGaCCgGCg -3'
miRNA:   3'- -CUGCGACUG-GCG--CCGuaGgCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 48766 0.66 0.816596
Target:  5'- uGGCGCcGAagagcaucacgaaccUCGUGGUGUCCagGUCCCGUc -3'
miRNA:   3'- -CUGCGaCU---------------GGCGCCGUAGG--CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 33403 0.66 0.813336
Target:  5'- aGGCGCUcGCCcCGGCGcaUCCGacaCUCGCg -3'
miRNA:   3'- -CUGCGAcUGGcGCCGU--AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 74655 0.66 0.821442
Target:  5'- uGAgGUccgGACCGCGGCGcgUCCG-CCguaGCg -3'
miRNA:   3'- -CUgCGa--CUGGCGCCGU--AGGCaGGg--CG- -5'
15839 3' -60.5 NC_004065.1 + 169581 0.66 0.829396
Target:  5'- -cCGCUG-UCGCGGC-UCCGgccggUUCGCg -3'
miRNA:   3'- cuGCGACuGGCGCCGuAGGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 25007 0.66 0.837192
Target:  5'- gGGCGUccgUGGgCGCGGCAaggggCCGugUCCCGa -3'
miRNA:   3'- -CUGCG---ACUgGCGCCGUa----GGC--AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 65897 0.66 0.837192
Target:  5'- -cUGCUGauGCCGCGGCGcCUGgaacuguaCCGCa -3'
miRNA:   3'- cuGCGAC--UGGCGCCGUaGGCag------GGCG- -5'
15839 3' -60.5 NC_004065.1 + 91195 0.66 0.829396
Target:  5'- aGCGCcgucggcGugCGCGGCAUCgG-CgCCGCc -3'
miRNA:   3'- cUGCGa------CugGCGCCGUAGgCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 196404 0.66 0.837192
Target:  5'- aACGCgaUGGCCuuGGCcaugCCGgCCCGCa -3'
miRNA:   3'- cUGCG--ACUGGcgCCGua--GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 149702 0.66 0.813336
Target:  5'- aACGCcggggGGCCGCGGCcgcgCCGgCCCu- -3'
miRNA:   3'- cUGCGa----CUGGCGCCGua--GGCaGGGcg -5'
15839 3' -60.5 NC_004065.1 + 27701 0.66 0.829396
Target:  5'- uGCGUaggGAUCG-GGCGUCUGgCCCGUg -3'
miRNA:   3'- cUGCGa--CUGGCgCCGUAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 66383 0.66 0.844824
Target:  5'- -cCGCUG-CCGCuGCcgCCGcCgCCGCc -3'
miRNA:   3'- cuGCGACuGGCGcCGuaGGCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 202000 0.66 0.829396
Target:  5'- -uCGUUGGCCGCcaacgcgauGGCGUCC-UCCUcgGCg -3'
miRNA:   3'- cuGCGACUGGCG---------CCGUAGGcAGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 47289 0.66 0.837192
Target:  5'- cGACGUgucggUGGCCcCGGCGUCg--CCCGUg -3'
miRNA:   3'- -CUGCG-----ACUGGcGCCGUAGgcaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 45539 0.66 0.837192
Target:  5'- cGGCGCcgcGGCgGCGGCGgcagCCG-CCCa- -3'
miRNA:   3'- -CUGCGa--CUGgCGCCGUa---GGCaGGGcg -5'
15839 3' -60.5 NC_004065.1 + 104152 0.66 0.837192
Target:  5'- -uCGCcuuCCGCGGCgguGUCgGUCgCCGCu -3'
miRNA:   3'- cuGCGacuGGCGCCG---UAGgCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 96964 0.66 0.837192
Target:  5'- -cUGCUG-CCGCgccugcugcgccGGcCGUCCGUCgCGCu -3'
miRNA:   3'- cuGCGACuGGCG------------CC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 20069 0.66 0.829396
Target:  5'- cGGCuCUG-CCGCGGCAcugCCGUCUgacgGCa -3'
miRNA:   3'- -CUGcGACuGGCGCCGUa--GGCAGGg---CG- -5'
15839 3' -60.5 NC_004065.1 + 124311 0.66 0.813336
Target:  5'- cACGCgGAugUCGUGGUucgCCGUCgCCGCc -3'
miRNA:   3'- cUGCGaCU--GGCGCCGua-GGCAG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.