Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15839 | 3' | -60.5 | NC_004065.1 | + | 26949 | 0.71 | 0.535578 |
Target: 5'- -cCGCUccggcGGCCGCGGCGggcUCCGgagCUCGCc -3' miRNA: 3'- cuGCGA-----CUGGCGCCGU---AGGCa--GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 132495 | 0.71 | 0.526308 |
Target: 5'- uGGCGCUGAUCGCGuCGUUCG-CgCGCa -3' miRNA: 3'- -CUGCGACUGGCGCcGUAGGCaGgGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 33893 | 0.71 | 0.563708 |
Target: 5'- aGGCGagggugaGACCGCGGaugCCGUaCCCGCc -3' miRNA: 3'- -CUGCga-----CUGGCGCCguaGGCA-GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 109438 | 0.71 | 0.557106 |
Target: 5'- cGCGCUGGCgGCGcguguaucgccucacGCAgaucgagagccugUCCGUCUCGCa -3' miRNA: 3'- cUGCGACUGgCGC---------------CGU-------------AGGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 110402 | 0.71 | 0.542101 |
Target: 5'- cACGCcacGGCCGaCGGCGUCuccuccgccgccggCGUCCUGCa -3' miRNA: 3'- cUGCGa--CUGGC-GCCGUAG--------------GCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 67585 | 0.71 | 0.558048 |
Target: 5'- aGCGCaggGGCCucggcucgagauagcGCGGCGUCCGUCgcaCCGUa -3' miRNA: 3'- cUGCGa--CUGG---------------CGCCGUAGGCAG---GGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 21946 | 0.7 | 0.630555 |
Target: 5'- uGAUGCUGAUgGCGGCcagggCCGUCguCgGCa -3' miRNA: 3'- -CUGCGACUGgCGCCGua---GGCAG--GgCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 167404 | 0.7 | 0.592216 |
Target: 5'- aAUGCUGcuGCCGCGGCugcugCCG-CCgGCg -3' miRNA: 3'- cUGCGAC--UGGCGCCGua---GGCaGGgCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 173380 | 0.7 | 0.630555 |
Target: 5'- cGACGgUGaaggguGCCGCGGCcgCUGcCaCCGCa -3' miRNA: 3'- -CUGCgAC------UGGCGCCGuaGGCaG-GGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 167627 | 0.7 | 0.611358 |
Target: 5'- -gUGCUGGauCCGCGGCcgCCaccCCCGCc -3' miRNA: 3'- cuGCGACU--GGCGCCGuaGGca-GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 169118 | 0.7 | 0.58268 |
Target: 5'- aGACGCgGGCCGCGGCcagCaguUCCCGa -3' miRNA: 3'- -CUGCGaCUGGCGCCGua-Ggc-AGGGCg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 127458 | 0.7 | 0.592216 |
Target: 5'- gGACGCUGaugGCCGCGGgAcCCGaCCCcgGCg -3' miRNA: 3'- -CUGCGAC---UGGCGCCgUaGGCaGGG--CG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 96855 | 0.7 | 0.592216 |
Target: 5'- cGCGCUGucGCCGCgGGCG-CCGUUCUGg -3' miRNA: 3'- cUGCGAC--UGGCG-CCGUaGGCAGGGCg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 22047 | 0.7 | 0.601777 |
Target: 5'- --gGCaGGCCGCGGUAUCCcUCCgGUc -3' miRNA: 3'- cugCGaCUGGCGCCGUAGGcAGGgCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 60770 | 0.7 | 0.630555 |
Target: 5'- -cCGCacagGGCCGCGGCcucCCGcCUCGCg -3' miRNA: 3'- cuGCGa---CUGGCGCCGua-GGCaGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 162203 | 0.7 | 0.630555 |
Target: 5'- -cUGCUG-CgGCGGCAcgUCCGgcgCCCGUc -3' miRNA: 3'- cuGCGACuGgCGCCGU--AGGCa--GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 203506 | 0.7 | 0.611358 |
Target: 5'- --gGCUGuGCCgGCGGgGUCCGUCgCGUg -3' miRNA: 3'- cugCGAC-UGG-CGCCgUAGGCAGgGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 88932 | 0.7 | 0.611358 |
Target: 5'- -cCGCUGAaggCGCGGCGguagCUGgccaggCCCGCg -3' miRNA: 3'- cuGCGACUg--GCGCCGUa---GGCa-----GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 94372 | 0.7 | 0.615194 |
Target: 5'- cGACGCgcguuacGGCCGCGGCgagcugucggcugguGgcgCCGUagaCCCGCg -3' miRNA: 3'- -CUGCGa------CUGGCGCCG---------------Ua--GGCA---GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 115156 | 0.69 | 0.668908 |
Target: 5'- -cCGCcGGCCgGCGGCA-CCGUCgUCGCc -3' miRNA: 3'- cuGCGaCUGG-CGCCGUaGGCAG-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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