Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15839 | 3' | -60.5 | NC_004065.1 | + | 93163 | 1.11 | 0.001457 |
Target: 5'- uGACGCUGACCGCGGCAUCCGUCCCGCg -3' miRNA: 3'- -CUGCGACUGGCGCCGUAGGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 77978 | 0.87 | 0.057655 |
Target: 5'- aGACGCUGGCCGCGGCGagCCGcCCCGg -3' miRNA: 3'- -CUGCGACUGGCGCCGUa-GGCaGGGCg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 208042 | 0.76 | 0.289248 |
Target: 5'- cGGCG-UGGCCGUGGCGgcccucaCCGUCCUGCc -3' miRNA: 3'- -CUGCgACUGGCGCCGUa------GGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 75322 | 0.76 | 0.322291 |
Target: 5'- gGACGCaGuagaCGCGGCGUCCGUCgCGUu -3' miRNA: 3'- -CUGCGaCug--GCGCCGUAGGCAGgGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 77230 | 0.75 | 0.343434 |
Target: 5'- cACGCUGAUCGUGGCcaCCGaguUCCUGCa -3' miRNA: 3'- cUGCGACUGGCGCCGuaGGC---AGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 120146 | 0.75 | 0.3507 |
Target: 5'- cGACGC-GGCCGCGGCGacgCCGguggCaCCGCc -3' miRNA: 3'- -CUGCGaCUGGCGCCGUa--GGCa---G-GGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 60910 | 0.74 | 0.373146 |
Target: 5'- -cUGCUGGCCGCGGCccgcGUCUGUCaggaCGUg -3' miRNA: 3'- cuGCGACUGGCGCCG----UAGGCAGg---GCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 100422 | 0.74 | 0.396549 |
Target: 5'- cGCGCUGACCGC-GCAgaacaCGUgCCGCu -3' miRNA: 3'- cUGCGACUGGCGcCGUag---GCAgGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 153862 | 0.74 | 0.412667 |
Target: 5'- cGACGCUGAUCGCgacgacgacgguGGUGUUCGUggggaCCCGCu -3' miRNA: 3'- -CUGCGACUGGCG------------CCGUAGGCA-----GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 38157 | 0.73 | 0.420876 |
Target: 5'- uGACGCUGGaagaCGCGGCgAUCCGcgCCaGCg -3' miRNA: 3'- -CUGCGACUg---GCGCCG-UAGGCa-GGgCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 138848 | 0.73 | 0.429183 |
Target: 5'- cGGCGCUu-CCGCGGCcgUCG-CCUGCg -3' miRNA: 3'- -CUGCGAcuGGCGCCGuaGGCaGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 26011 | 0.73 | 0.437586 |
Target: 5'- -uCGCUGACCGUGGCcucggcgUCGUCCaccaGCg -3' miRNA: 3'- cuGCGACUGGCGCCGua-----GGCAGGg---CG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 80322 | 0.73 | 0.45467 |
Target: 5'- cGGCGC-GGCCGCGGCcccccggcGUUCGaCCUGCa -3' miRNA: 3'- -CUGCGaCUGGCGCCG--------UAGGCaGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 120118 | 0.73 | 0.463347 |
Target: 5'- cGGCGCuUGACuCGcCGGCG-CCGUCCCu- -3' miRNA: 3'- -CUGCG-ACUG-GC-GCCGUaGGCAGGGcg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 41448 | 0.73 | 0.463347 |
Target: 5'- -gUGCUGGCCGUGGaGagCGUCCUGCu -3' miRNA: 3'- cuGCGACUGGCGCCgUagGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 72026 | 0.72 | 0.472109 |
Target: 5'- cGACGCUGAUgGCGGCG-CUGcaCCCGg -3' miRNA: 3'- -CUGCGACUGgCGCCGUaGGCa-GGGCg -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 117393 | 0.72 | 0.498881 |
Target: 5'- cGACGCUcGGCCGCGcGCG-CUGggCUCGCg -3' miRNA: 3'- -CUGCGA-CUGGCGC-CGUaGGCa-GGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 86891 | 0.72 | 0.507956 |
Target: 5'- cGACGCaGGUCGCGGCGcCgGUCUCGCc -3' miRNA: 3'- -CUGCGaCUGGCGCCGUaGgCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 90121 | 0.72 | 0.507956 |
Target: 5'- uGGCGCcgccggccgGAggccCCGCGGCcaccucGUCCGUCCUGCc -3' miRNA: 3'- -CUGCGa--------CU----GGCGCCG------UAGGCAGGGCG- -5' |
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15839 | 3' | -60.5 | NC_004065.1 | + | 88374 | 0.72 | 0.507956 |
Target: 5'- -cCGC-GGCCGCGGCAccgccaccgcccUCCGUCgCCGa -3' miRNA: 3'- cuGCGaCUGGCGCCGU------------AGGCAG-GGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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