miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 132495 0.71 0.526308
Target:  5'- uGGCGCUGAUCGCGuCGUUCG-CgCGCa -3'
miRNA:   3'- -CUGCGACUGGCGCcGUAGGCaGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 26949 0.71 0.535578
Target:  5'- -cCGCUccggcGGCCGCGGCGggcUCCGgagCUCGCc -3'
miRNA:   3'- cuGCGA-----CUGGCGCCGU---AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 110402 0.71 0.542101
Target:  5'- cACGCcacGGCCGaCGGCGUCuccuccgccgccggCGUCCUGCa -3'
miRNA:   3'- cUGCGa--CUGGC-GCCGUAG--------------GCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109438 0.71 0.557106
Target:  5'- cGCGCUGGCgGCGcguguaucgccucacGCAgaucgagagccugUCCGUCUCGCa -3'
miRNA:   3'- cUGCGACUGgCGC---------------CGU-------------AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 67585 0.71 0.558048
Target:  5'- aGCGCaggGGCCucggcucgagauagcGCGGCGUCCGUCgcaCCGUa -3'
miRNA:   3'- cUGCGa--CUGG---------------CGCCGUAGGCAG---GGCG- -5'
15839 3' -60.5 NC_004065.1 + 33893 0.71 0.563708
Target:  5'- aGGCGagggugaGACCGCGGaugCCGUaCCCGCc -3'
miRNA:   3'- -CUGCga-----CUGGCGCCguaGGCA-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 169118 0.7 0.58268
Target:  5'- aGACGCgGGCCGCGGCcagCaguUCCCGa -3'
miRNA:   3'- -CUGCGaCUGGCGCCGua-Ggc-AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 96855 0.7 0.592216
Target:  5'- cGCGCUGucGCCGCgGGCG-CCGUUCUGg -3'
miRNA:   3'- cUGCGAC--UGGCG-CCGUaGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 167404 0.7 0.592216
Target:  5'- aAUGCUGcuGCCGCGGCugcugCCG-CCgGCg -3'
miRNA:   3'- cUGCGAC--UGGCGCCGua---GGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 127458 0.7 0.592216
Target:  5'- gGACGCUGaugGCCGCGGgAcCCGaCCCcgGCg -3'
miRNA:   3'- -CUGCGAC---UGGCGCCgUaGGCaGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 22047 0.7 0.601777
Target:  5'- --gGCaGGCCGCGGUAUCCcUCCgGUc -3'
miRNA:   3'- cugCGaCUGGCGCCGUAGGcAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 203506 0.7 0.611358
Target:  5'- --gGCUGuGCCgGCGGgGUCCGUCgCGUg -3'
miRNA:   3'- cugCGAC-UGG-CGCCgUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 167627 0.7 0.611358
Target:  5'- -gUGCUGGauCCGCGGCcgCCaccCCCGCc -3'
miRNA:   3'- cuGCGACU--GGCGCCGuaGGca-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 88932 0.7 0.611358
Target:  5'- -cCGCUGAaggCGCGGCGguagCUGgccaggCCCGCg -3'
miRNA:   3'- cuGCGACUg--GCGCCGUa---GGCa-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 94372 0.7 0.615194
Target:  5'- cGACGCgcguuacGGCCGCGGCgagcugucggcugguGgcgCCGUagaCCCGCg -3'
miRNA:   3'- -CUGCGa------CUGGCGCCG---------------Ua--GGCA---GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 173380 0.7 0.630555
Target:  5'- cGACGgUGaaggguGCCGCGGCcgCUGcCaCCGCa -3'
miRNA:   3'- -CUGCgAC------UGGCGCCGuaGGCaG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 162203 0.7 0.630555
Target:  5'- -cUGCUG-CgGCGGCAcgUCCGgcgCCCGUc -3'
miRNA:   3'- cuGCGACuGgCGCCGU--AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 60770 0.7 0.630555
Target:  5'- -cCGCacagGGCCGCGGCcucCCGcCUCGCg -3'
miRNA:   3'- cuGCGa---CUGGCGCCGua-GGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 21946 0.7 0.630555
Target:  5'- uGAUGCUGAUgGCGGCcagggCCGUCguCgGCa -3'
miRNA:   3'- -CUGCGACUGgCGCCGua---GGCAG--GgCG- -5'
15839 3' -60.5 NC_004065.1 + 149207 0.69 0.640158
Target:  5'- cGGCGCUG-CUGCuGUcgCUGcUCCCGCu -3'
miRNA:   3'- -CUGCGACuGGCGcCGuaGGC-AGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.