miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 149207 0.69 0.640158
Target:  5'- cGGCGCUG-CUGCuGUcgCUGcUCCCGCu -3'
miRNA:   3'- -CUGCGACuGGCGcCGuaGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 127409 0.69 0.640158
Target:  5'- cGACGUUGugCa-GGCGUCCcGUCCCa- -3'
miRNA:   3'- -CUGCGACugGcgCCGUAGG-CAGGGcg -5'
15839 3' -60.5 NC_004065.1 + 29584 0.69 0.659342
Target:  5'- uGACgGC-GGCCGCGGUGaccgCgGUCCUGCa -3'
miRNA:   3'- -CUG-CGaCUGGCGCCGUa---GgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 100561 0.69 0.659342
Target:  5'- -cCGCUGGugcgcUUGCGGCuuuuuUCCG-CCCGCg -3'
miRNA:   3'- cuGCGACU-----GGCGCCGu----AGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 17666 0.69 0.659342
Target:  5'- gGAUGaC-GACCGaCGGuCGUCCGUCgCGCc -3'
miRNA:   3'- -CUGC-GaCUGGC-GCC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 180123 0.69 0.659342
Target:  5'- cGACGaugGACgGCGGguUCCGUCUgGa -3'
miRNA:   3'- -CUGCga-CUGgCGCCguAGGCAGGgCg -5'
15839 3' -60.5 NC_004065.1 + 68155 0.69 0.660299
Target:  5'- gGACGCggUGAUCGCGGCGgcgcgcgcgacggagCUGUcggcCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGGCGCCGUa--------------GGCA----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 113411 0.69 0.66317
Target:  5'- cGACGUcgUGGCCagggagcugcgcagaGCGGCggCCGgggggCCCGCc -3'
miRNA:   3'- -CUGCG--ACUGG---------------CGCCGuaGGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 139891 0.69 0.668908
Target:  5'- gGACGaggUGGCCGCGGgGccUCCGgCCgGCg -3'
miRNA:   3'- -CUGCg--ACUGGCGCCgU--AGGCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 124365 0.69 0.668908
Target:  5'- cGAuCGUc-ACCGCGGCAUCCG--CCGCg -3'
miRNA:   3'- -CU-GCGacUGGCGCCGUAGGCagGGCG- -5'
15839 3' -60.5 NC_004065.1 + 115156 0.69 0.668908
Target:  5'- -cCGCcGGCCgGCGGCA-CCGUCgUCGCc -3'
miRNA:   3'- cuGCGaCUGG-CGCCGUaGGCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 116632 0.69 0.668908
Target:  5'- cGACGUcgcgaggGAgCCGCaGGCGUUCGUCCUGa -3'
miRNA:   3'- -CUGCGa------CU-GGCG-CCGUAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 211870 0.69 0.677495
Target:  5'- aACGCc--CCGCGGacgauaccgccaaCAUcCCGUCCCGCg -3'
miRNA:   3'- cUGCGacuGGCGCC-------------GUA-GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 109916 0.69 0.678447
Target:  5'- -uCGUccGCCGCGGCcgCCGUCgCGUc -3'
miRNA:   3'- cuGCGacUGGCGCCGuaGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 30175 0.69 0.678447
Target:  5'- cGACGagUGcCUGCGGCGgugguggCCGUUCUGCa -3'
miRNA:   3'- -CUGCg-ACuGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 119627 0.69 0.678447
Target:  5'- aGACGCcgucGGCCGUGGCGUguUCGaacggCCUGCg -3'
miRNA:   3'- -CUGCGa---CUGGCGCCGUA--GGCa----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 61383 0.69 0.687954
Target:  5'- cGACGgUcGCCGCgccGGC-UCCG-CCCGCg -3'
miRNA:   3'- -CUGCgAcUGGCG---CCGuAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 138770 0.69 0.687954
Target:  5'- cGGCGCgG-UCGaUGGCGUCaagGUCCCGCu -3'
miRNA:   3'- -CUGCGaCuGGC-GCCGUAGg--CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 89301 0.68 0.697419
Target:  5'- cACGUUGACCgagcGCGGCAgcgaGUUCUGCa -3'
miRNA:   3'- cUGCGACUGG----CGCCGUagg-CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 56639 0.68 0.706837
Target:  5'- gGugGCagcGGCCGCGGCAcCCuUCaCCGUc -3'
miRNA:   3'- -CugCGa--CUGGCGCCGUaGGcAG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.