miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 202000 0.66 0.829396
Target:  5'- -uCGUUGGCCGCcaacgcgauGGCGUCC-UCCUcgGCg -3'
miRNA:   3'- cuGCGACUGGCG---------CCGUAGGcAGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 27701 0.66 0.829396
Target:  5'- uGCGUaggGAUCG-GGCGUCUGgCCCGUg -3'
miRNA:   3'- cUGCGa--CUGGCgCCGUAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 20069 0.66 0.829396
Target:  5'- cGGCuCUG-CCGCGGCAcugCCGUCUgacgGCa -3'
miRNA:   3'- -CUGcGACuGGCGCCGUa--GGCAGGg---CG- -5'
15839 3' -60.5 NC_004065.1 + 82284 0.66 0.829396
Target:  5'- -gUGUUGGCCGUGGUcUCCcugagggCCCGUa -3'
miRNA:   3'- cuGCGACUGGCGCCGuAGGca-----GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 117042 0.66 0.829396
Target:  5'- aGACGCUGcACCGCGccuucaGCGaaCGUUcggCCGCg -3'
miRNA:   3'- -CUGCGAC-UGGCGC------CGUagGCAG---GGCG- -5'
15839 3' -60.5 NC_004065.1 + 40153 0.66 0.821442
Target:  5'- aGACGCUG-CCGaCGGCAgcaaaCCc-CUCGCg -3'
miRNA:   3'- -CUGCGACuGGC-GCCGUa----GGcaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 1554 0.66 0.821442
Target:  5'- cGACGCcgGACuCGCGaugaGCAacgCgGUCCCGUu -3'
miRNA:   3'- -CUGCGa-CUG-GCGC----CGUa--GgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 136619 0.66 0.821442
Target:  5'- gGGCGCUGGuCCGaGGCggCgGUCCggaGCg -3'
miRNA:   3'- -CUGCGACU-GGCgCCGuaGgCAGGg--CG- -5'
15839 3' -60.5 NC_004065.1 + 121301 0.66 0.821442
Target:  5'- gGAUGCUcACCG-GGCAgCgGcCCCGCa -3'
miRNA:   3'- -CUGCGAcUGGCgCCGUaGgCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 74655 0.66 0.821442
Target:  5'- uGAgGUccgGACCGCGGCGcgUCCG-CCguaGCg -3'
miRNA:   3'- -CUgCGa--CUGGCGCCGU--AGGCaGGg--CG- -5'
15839 3' -60.5 NC_004065.1 + 66129 0.66 0.821442
Target:  5'- aGGCGCUGGCgCGCugGGCcgCgGaCCgGCg -3'
miRNA:   3'- -CUGCGACUG-GCG--CCGuaGgCaGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 48766 0.66 0.816596
Target:  5'- uGGCGCcGAagagcaucacgaaccUCGUGGUGUCCagGUCCCGUc -3'
miRNA:   3'- -CUGCGaCU---------------GGCGCCGUAGG--CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 124311 0.66 0.813336
Target:  5'- cACGCgGAugUCGUGGUucgCCGUCgCCGCc -3'
miRNA:   3'- cUGCGaCU--GGCGCCGua-GGCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 224690 0.66 0.813336
Target:  5'- gGACGC-GACCG-GGUagAUCC-UCUCGCa -3'
miRNA:   3'- -CUGCGaCUGGCgCCG--UAGGcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 149702 0.66 0.813336
Target:  5'- aACGCcggggGGCCGCGGCcgcgCCGgCCCu- -3'
miRNA:   3'- cUGCGa----CUGGCGCCGua--GGCaGGGcg -5'
15839 3' -60.5 NC_004065.1 + 33403 0.66 0.813336
Target:  5'- aGGCGCUcGCCcCGGCGcaUCCGacaCUCGCg -3'
miRNA:   3'- -CUGCGAcUGGcGCCGU--AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 163491 0.66 0.808403
Target:  5'- cGGCGCcggUGGCgGCGGCuUCaauucuucggaagaaCGUCgCCGCg -3'
miRNA:   3'- -CUGCG---ACUGgCGCCGuAG---------------GCAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 131872 0.66 0.805086
Target:  5'- cGGCGgUGGCgGCGGCGaCUaUCaCCGCc -3'
miRNA:   3'- -CUGCgACUGgCGCCGUaGGcAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 131763 0.66 0.805086
Target:  5'- aGGCGCgcGCCcagGGCcgCCGUCCCGa -3'
miRNA:   3'- -CUGCGacUGGcg-CCGuaGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 59708 0.67 0.796697
Target:  5'- gGGCGCcgagcGGCCGCGGCGcacggcgaCCGUCgCGg -3'
miRNA:   3'- -CUGCGa----CUGGCGCCGUa-------GGCAGgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.