miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 59708 0.67 0.796697
Target:  5'- gGGCGCcgagcGGCCGCGGCGcacggcgaCCGUCgCGg -3'
miRNA:   3'- -CUGCGa----CUGGCGCCGUa-------GGCAGgGCg -5'
15839 3' -60.5 NC_004065.1 + 20471 0.67 0.796697
Target:  5'- --aGCcGGCCG-GGCcUCCuucaGUCCCGCg -3'
miRNA:   3'- cugCGaCUGGCgCCGuAGG----CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 201177 0.67 0.796697
Target:  5'- aGCGCcGACaccaaGCGGCG--CGUCCCGg -3'
miRNA:   3'- cUGCGaCUGg----CGCCGUagGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 126495 0.67 0.794155
Target:  5'- cGCGCUGcacCCGCGucgccaugcgccgcGCGaUCGUCCCGUg -3'
miRNA:   3'- cUGCGACu--GGCGC--------------CGUaGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 110560 0.67 0.788178
Target:  5'- gGACGCUucggcGGuCCGCcaGGCGUCgGUCUCGg -3'
miRNA:   3'- -CUGCGA-----CU-GGCG--CCGUAGgCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 167885 0.67 0.788178
Target:  5'- --aGCUGAUccccuccuguaCGCGGCGacgaugCCGccUCCCGCg -3'
miRNA:   3'- cugCGACUG-----------GCGCCGUa-----GGC--AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 168627 0.67 0.788178
Target:  5'- uGGCGCUGguGCCGCgGGCGgagCCGg--CGCg -3'
miRNA:   3'- -CUGCGAC--UGGCG-CCGUa--GGCaggGCG- -5'
15839 3' -60.5 NC_004065.1 + 200011 0.67 0.788178
Target:  5'- uGACGg-GcACCGCGGUcgucaggggcagGUgCCGUUCCGCg -3'
miRNA:   3'- -CUGCgaC-UGGCGCCG------------UA-GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 158362 0.67 0.788178
Target:  5'- -cCGCUGcuGCUGCugaggaGGCccUUCGUCCCGCg -3'
miRNA:   3'- cuGCGAC--UGGCG------CCGu-AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 34577 0.67 0.779535
Target:  5'- cGACGCaGACCGUGcGCuccgcgacgCCGUUCCugGCg -3'
miRNA:   3'- -CUGCGaCUGGCGC-CGua-------GGCAGGG--CG- -5'
15839 3' -60.5 NC_004065.1 + 198655 0.67 0.779535
Target:  5'- -cCGCcGGCCGau-CAgacUCCGUCCCGCg -3'
miRNA:   3'- cuGCGaCUGGCgccGU---AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 185178 0.67 0.779535
Target:  5'- cGACGCUG-CUcCGGCccgugucgcuGUCCGUgUCGCg -3'
miRNA:   3'- -CUGCGACuGGcGCCG----------UAGGCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 58618 0.67 0.779535
Target:  5'- cGACGCg---CGCGGCGgagucgCCGgUCUCGCg -3'
miRNA:   3'- -CUGCGacugGCGCCGUa-----GGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 102803 0.67 0.770776
Target:  5'- cGCGCccGAuccUCGCGGCcgCCGcUCCCGa -3'
miRNA:   3'- cUGCGa-CU---GGCGCCGuaGGC-AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 9294 0.67 0.761907
Target:  5'- cACGCcGACCGCGaUcgCCGUgUCGCu -3'
miRNA:   3'- cUGCGaCUGGCGCcGuaGGCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 192805 0.67 0.761907
Target:  5'- cAUGgaGACgGCGGCGUCUGggCgCUGCg -3'
miRNA:   3'- cUGCgaCUGgCGCCGUAGGCa-G-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 20881 0.67 0.761907
Target:  5'- aGCGacacGGCCGCGGCGcuggggaaUCCG-CUCGCu -3'
miRNA:   3'- cUGCga--CUGGCGCCGU--------AGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 200444 0.67 0.761907
Target:  5'- cGCGgUcACCGCGGCcgCCGUCagauaGCg -3'
miRNA:   3'- cUGCgAcUGGCGCCGuaGGCAGgg---CG- -5'
15839 3' -60.5 NC_004065.1 + 141601 0.67 0.761907
Target:  5'- aACGC-GACgGCGGCGggcUCCGcugCCgGCg -3'
miRNA:   3'- cUGCGaCUGgCGCCGU---AGGCa--GGgCG- -5'
15839 3' -60.5 NC_004065.1 + 109607 0.67 0.752938
Target:  5'- cGCGCUcgacccccgGGCCGCGGUgcccaccaccGUCgagggCGUCCUGCg -3'
miRNA:   3'- cUGCGA---------CUGGCGCCG----------UAG-----GCAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.