miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 58932 0.67 0.752938
Target:  5'- --aGCUGACCGUGGUAUUC-UCCUuCa -3'
miRNA:   3'- cugCGACUGGCGCCGUAGGcAGGGcG- -5'
15839 3' -60.5 NC_004065.1 + 52315 0.67 0.750228
Target:  5'- -uCGCUGuccccuccacaacuAcaacCCGCGGCA-CCGUCCgCGCa -3'
miRNA:   3'- cuGCGAC--------------U----GGCGCCGUaGGCAGG-GCG- -5'
15839 3' -60.5 NC_004065.1 + 82407 0.68 0.743874
Target:  5'- -gUGCUguuguugacGACCGCGGUguugGUCUGgUCCUGCg -3'
miRNA:   3'- cuGCGA---------CUGGCGCCG----UAGGC-AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 195778 0.68 0.743874
Target:  5'- cGCGCUGACCaUGGCGgaCCGcgggCCCuGCg -3'
miRNA:   3'- cUGCGACUGGcGCCGUa-GGCa---GGG-CG- -5'
15839 3' -60.5 NC_004065.1 + 153278 0.68 0.743874
Target:  5'- uGACGa-GGCCGcCGGCG-CCGcgCCCGUc -3'
miRNA:   3'- -CUGCgaCUGGC-GCCGUaGGCa-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 79988 0.68 0.743874
Target:  5'- -uCGCcGACCGCgGGCAguuccuccuUCCGagCCGCc -3'
miRNA:   3'- cuGCGaCUGGCG-CCGU---------AGGCagGGCG- -5'
15839 3' -60.5 NC_004065.1 + 160625 0.68 0.734725
Target:  5'- uGGCGCc--CCGuCGGCAgCUGUUCCGCc -3'
miRNA:   3'- -CUGCGacuGGC-GCCGUaGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 223084 0.68 0.734725
Target:  5'- cGACGCaGcuuCCGaCGGCGgacgccgaggCCGUgCCCGCa -3'
miRNA:   3'- -CUGCGaCu--GGC-GCCGUa---------GGCA-GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 167545 0.68 0.734725
Target:  5'- aACGCUaccGCCGCGGCcgcuccugCCGUCgCCGg -3'
miRNA:   3'- cUGCGAc--UGGCGCCGua------GGCAG-GGCg -5'
15839 3' -60.5 NC_004065.1 + 1566 0.68 0.734725
Target:  5'- --aGCUGACgGCGugccugcgaGCGaccUCCGUCUCGCc -3'
miRNA:   3'- cugCGACUGgCGC---------CGU---AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 22917 0.68 0.725498
Target:  5'- aGugGC-GGCgGuCGGCGguUCCGUCUCGUc -3'
miRNA:   3'- -CugCGaCUGgC-GCCGU--AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 120107 0.68 0.725498
Target:  5'- gGACGCgacggcGGCCGCGGCGgacgagCCGggaCCCc- -3'
miRNA:   3'- -CUGCGa-----CUGGCGCCGUa-----GGCa--GGGcg -5'
15839 3' -60.5 NC_004065.1 + 179402 0.68 0.725498
Target:  5'- --gGCUGuauCCagGUGGCcUCCGUCCCGa -3'
miRNA:   3'- cugCGACu--GG--CGCCGuAGGCAGGGCg -5'
15839 3' -60.5 NC_004065.1 + 118163 0.68 0.725498
Target:  5'- -cCGa-GACCGCGGCGgcggCCGUCaCgGCu -3'
miRNA:   3'- cuGCgaCUGGCGCCGUa---GGCAG-GgCG- -5'
15839 3' -60.5 NC_004065.1 + 64007 0.68 0.725498
Target:  5'- aGACGgUGACgGCcucccGCGUCCGucguuUCCUGCa -3'
miRNA:   3'- -CUGCgACUGgCGc----CGUAGGC-----AGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 123678 0.68 0.724571
Target:  5'- cGCGCUGcCCGUgcagcagcgccgGGCcgcccuuGUCCGUCuuGCg -3'
miRNA:   3'- cUGCGACuGGCG------------CCG-------UAGGCAGggCG- -5'
15839 3' -60.5 NC_004065.1 + 128188 0.68 0.716199
Target:  5'- cGACGCcc-CCGCGaGCAUUacuagugccaGUCCCGCc -3'
miRNA:   3'- -CUGCGacuGGCGC-CGUAGg---------CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 36542 0.68 0.716199
Target:  5'- -uCGCUaa-CG-GGCAUCCGUCCgGCg -3'
miRNA:   3'- cuGCGAcugGCgCCGUAGGCAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 56639 0.68 0.706837
Target:  5'- gGugGCagcGGCCGCGGCAcCCuUCaCCGUc -3'
miRNA:   3'- -CugCGa--CUGGCGCCGUaGGcAG-GGCG- -5'
15839 3' -60.5 NC_004065.1 + 198910 0.68 0.706837
Target:  5'- aGACGgUGACgGUGGUGcCUG-CCCGCu -3'
miRNA:   3'- -CUGCgACUGgCGCCGUaGGCaGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.