miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15839 3' -60.5 NC_004065.1 + 1554 0.66 0.821442
Target:  5'- cGACGCcgGACuCGCGaugaGCAacgCgGUCCCGUu -3'
miRNA:   3'- -CUGCGa-CUG-GCGC----CGUa--GgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 1566 0.68 0.734725
Target:  5'- --aGCUGACgGCGugccugcgaGCGaccUCCGUCUCGCc -3'
miRNA:   3'- cugCGACUGgCGC---------CGU---AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 9294 0.67 0.761907
Target:  5'- cACGCcGACCGCGaUcgCCGUgUCGCu -3'
miRNA:   3'- cUGCGaCUGGCGCcGuaGGCAgGGCG- -5'
15839 3' -60.5 NC_004065.1 + 17666 0.69 0.659342
Target:  5'- gGAUGaC-GACCGaCGGuCGUCCGUCgCGCc -3'
miRNA:   3'- -CUGC-GaCUGGC-GCC-GUAGGCAGgGCG- -5'
15839 3' -60.5 NC_004065.1 + 20069 0.66 0.829396
Target:  5'- cGGCuCUG-CCGCGGCAcugCCGUCUgacgGCa -3'
miRNA:   3'- -CUGcGACuGGCGCCGUa--GGCAGGg---CG- -5'
15839 3' -60.5 NC_004065.1 + 20471 0.67 0.796697
Target:  5'- --aGCcGGCCG-GGCcUCCuucaGUCCCGCg -3'
miRNA:   3'- cugCGaCUGGCgCCGuAGG----CAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 20881 0.67 0.761907
Target:  5'- aGCGacacGGCCGCGGCGcuggggaaUCCG-CUCGCu -3'
miRNA:   3'- cUGCga--CUGGCGCCGU--------AGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 21946 0.7 0.630555
Target:  5'- uGAUGCUGAUgGCGGCcagggCCGUCguCgGCa -3'
miRNA:   3'- -CUGCGACUGgCGCCGua---GGCAG--GgCG- -5'
15839 3' -60.5 NC_004065.1 + 22047 0.7 0.601777
Target:  5'- --gGCaGGCCGCGGUAUCCcUCCgGUc -3'
miRNA:   3'- cugCGaCUGGCGCCGUAGGcAGGgCG- -5'
15839 3' -60.5 NC_004065.1 + 22917 0.68 0.725498
Target:  5'- aGugGC-GGCgGuCGGCGguUCCGUCUCGUc -3'
miRNA:   3'- -CugCGaCUGgC-GCCGU--AGGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 25007 0.66 0.837192
Target:  5'- gGGCGUccgUGGgCGCGGCAaggggCCGugUCCCGa -3'
miRNA:   3'- -CUGCG---ACUgGCGCCGUa----GGC--AGGGCg -5'
15839 3' -60.5 NC_004065.1 + 26011 0.73 0.437586
Target:  5'- -uCGCUGACCGUGGCcucggcgUCGUCCaccaGCg -3'
miRNA:   3'- cuGCGACUGGCGCCGua-----GGCAGGg---CG- -5'
15839 3' -60.5 NC_004065.1 + 26949 0.71 0.535578
Target:  5'- -cCGCUccggcGGCCGCGGCGggcUCCGgagCUCGCc -3'
miRNA:   3'- cuGCGA-----CUGGCGCCGU---AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 27701 0.66 0.829396
Target:  5'- uGCGUaggGAUCG-GGCGUCUGgCCCGUg -3'
miRNA:   3'- cUGCGa--CUGGCgCCGUAGGCaGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 28736 0.66 0.844824
Target:  5'- --aGgaGACCGCGGUGgcggacgCCuUCCUGCg -3'
miRNA:   3'- cugCgaCUGGCGCCGUa------GGcAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 29584 0.69 0.659342
Target:  5'- uGACgGC-GGCCGCGGUGaccgCgGUCCUGCa -3'
miRNA:   3'- -CUG-CGaCUGGCGCCGUa---GgCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 30175 0.69 0.678447
Target:  5'- cGACGagUGcCUGCGGCGgugguggCCGUUCUGCa -3'
miRNA:   3'- -CUGCg-ACuGGCGCCGUa------GGCAGGGCG- -5'
15839 3' -60.5 NC_004065.1 + 30461 0.66 0.837192
Target:  5'- cGGCGUcugGACCGCGGCAcgauggggCgCG-CCCGg -3'
miRNA:   3'- -CUGCGa--CUGGCGCCGUa-------G-GCaGGGCg -5'
15839 3' -60.5 NC_004065.1 + 33403 0.66 0.813336
Target:  5'- aGGCGCUcGCCcCGGCGcaUCCGacaCUCGCg -3'
miRNA:   3'- -CUGCGAcUGGcGCCGU--AGGCa--GGGCG- -5'
15839 3' -60.5 NC_004065.1 + 33893 0.71 0.563708
Target:  5'- aGGCGagggugaGACCGCGGaugCCGUaCCCGCc -3'
miRNA:   3'- -CUGCga-----CUGGCGCCguaGGCA-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.